PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G194100.4 | ||||||||
Common Name | B456_008G194100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 372aa MW: 41872.4 Da PI: 6.9592 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.7 | 7.5e-24 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr+gilKKA+ELS+LCd+ + +++fs+tgk Gorai.008G194100.4 9 KRLESYSNRQVTYSKRRTGILKKAKELSILCDIHIILLMFSPTGK 53 689****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-30 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.077 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-26 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.68E-26 | 2 | 82 | No hit | No description |
PRINTS | PR00404 | 1.5E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-20 | 11 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MGRVKLKIKR LESYSNRQVT YSKRRTGILK KAKELSILCD IHIILLMFSP TGKPTLFHGE 60 RSTIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD LNIQDFLGAT QSVEEMTNEV 120 SMLQARLSEV HKRLSYWNNP DKIDNLEHLR QMENSLRESI ERIRIHKENY GKHHLLPLES 180 TSQNAMPLPV MIGGVQEAQP VTWLPNNDNQ QMLLHNESNF LPNLDTECAT DGSLAGYSGF 240 FVPGKQTDIG NSVQVDNTIQ ESNVLNELGN NAFLNSQLGK QYLYPQFSAS NLQDDEKLKS 300 EMVGNLQGDP GVYQVITDFE APRPMSNGGH QAWISSSGPC GIAMFDGNSY HQQTKSTFMN 360 QTPPSGQCHN L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-14 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 2e-14 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 2e-14 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 2e-14 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012438772.1 | 0.0 | PREDICTED: MADS-box protein defh21-like isoform X3 | ||||
Swissprot | Q7X9I0 | 1e-108 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A0D2T388 | 0.0 | A0A0D2T388_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G194100.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-110 | AGAMOUS-like 65 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G194100.4 |
Publications ? help Back to Top | |||
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