PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G193700.1 | ||||||||
Common Name | B456_008G193700, LOC105764653 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 504aa MW: 54794.3 Da PI: 5.1073 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.4 | 8.9e-40 | 148 | 208 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s Gorai.008G193700.1 148 PDQILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 208 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 141 | 205 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-32 | 149 | 206 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.826 | 152 | 206 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 154 | 190 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MQESKDPGIK LFGKKIHLPA DGEISTLSVD EFDKAQCGNR VVDDEDFEEF DDDDDDDGGG 60 DGDEEEDEQK DKTEQDSLAE QIADTGQEDD NIQPSNREES TNPETSPEPN VNPKTPSIDE 120 ETGKSKTGKT DKEQSDGSKS QEKTLKKPDQ ILPCPRCNSM DTKFCYYNNY NINQPRHFCK 180 ACQRYWTAGG TMRNVPVGAG RRKNKNSASH YRHISISEAL QAARIDAPNA AHHPALKSNG 240 RVLSFGIDAP ICDSMASVLN LGEKKVLNGA RNGFHGLEEQ RVSVPNRREN GDDCSSGSSI 300 TVSNSMEEGG RSCIQENRMG NINGFPSPIP CLPGVPWPYP WNSAVPPPAF CPSGFPMSFY 360 PAAAYWNCGI PGTWNVPWLS PQSSSTSSNH TAPTSGPNSP TLGKHSREGD MAKLDDSEKQ 420 KATKQKNGCV LVPKTLRIDD PSEAAKSSIW ATLGIKNESL SGGGLFKAFH PKSDEKNHVA 480 EASPVLRANP AALSRSLNFH ERS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269|PubMed:19619493}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00394 | DAP | Transfer from AT3G47500 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ393639 | 5e-92 | GQ393639.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0604 SSR marker CGR5655 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012438765.1 | 0.0 | PREDICTED: cyclic dof factor 3 | ||||
Swissprot | Q8LFV3 | 1e-131 | CDF3_ARATH; Cyclic dof factor 3 | ||||
TrEMBL | A0A0D2U601 | 0.0 | A0A0D2U601_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G193700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5441 | 28 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 1e-123 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G193700.1 |
Entrez Gene | 105764653 |