PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G191200.1
Common NameB456_008G191200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 608aa    MW: 65481.2 Da    PI: 6.8327
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G191200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30270329159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+
  Gorai.008G191200.1 270 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDLSILITTYEGTHNHP 329
                         58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-32255331IPR003657WRKY domain
SuperFamilySSF1182901.7E-27262331IPR003657WRKY domain
PROSITE profilePS5081128.38265331IPR003657WRKY domain
SMARTSM007743.8E-36270330IPR003657WRKY domain
PfamPF031069.8E-27271329IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MEENLKKRSD DRGGAVVKKE KIADSCADDE DAPAKVGDKR PCCENDDKKP SSPGKKDLSS  60
SNNNKVSLKS DTERTEPEYS MASSSTRKEQ DDQLESAKAE MGEVREENQR LKMHLNRIMK  120
DYQKLQMQFY DIVGQDSKKS QAAENNDHHH QQEEEEPELV SLTLGRFSSD SKKDGKNKAS  180
SSHGKEEERG NEGLSLGLDY KLEASKSEVD DEALPNPSPV NGTQELKEEE TWPPSKVLKT  240
TRTGDDEVLQ QNSVKKARVC VRTRCETPTM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP  300
SCPVRKQVQR CAEDLSILIT TYEGTHNHPL PMSATAMAST TCAAASMLLS GASSSGSSVA  360
SLTSTANLHG LNVYLSDNSK SKFYLPNSSL SAASSHPTIT LDLTSTPSSS SSFPFNRFSS  420
AYPTTSRYAS ASLSFGSSES NTVSWGNGLL SYGSPSTQPY MKNPLNINGR PQSTMENNSI  480
FPSSMQKNNL NPPQQPLPDT IAAATKAITT DPNFQSALAA ALTSIIGTGN NNNGGGGSGE  540
SLAQRLKWGE QTFAVNGNGC GSSFFNKPPP STTSQPGSLI FLPPNSLPFS TPKSASTSPG  600
DTGNHTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-22261331877Probable WRKY transcription factor 4
2lex_A2e-22261331877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698260.0KF669826.1 Gossypium hirsutum WRKY transcription factor 68 (WRKY68) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438725.10.0PREDICTED: probable WRKY transcription factor 61 isoform X2
SwissprotA0A3Q7GFB51e-128WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLA0A0D2RI450.0A0A0D2RI45_GOSRA; Uncharacterized protein
STRINGGorai.008G191200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.15e-67WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]