PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G185900.1
Common NameB456_008G185900, LOC105764562
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 358aa    MW: 40051.1 Da    PI: 9.3069
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G185900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2445.5e-1464112155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+ykGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  Gorai.008G185900.1  64 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAAQRFRG 112
                         89****9888.8*********3.....5**********99*************98 PP
2B3101.16.2e-32193293196
                         EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f+k+ tpsdv+k++rlv+pk++ae++     g+ + +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ 
  Gorai.008G185900.1 193 FEKAVTPSDVGKLNRLVIPKQHAEKYfplqsGSASSKGVLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKKLKAGDIVSFQRST 283
                         89****************************97788899**************************************************876 PP

                         SSEE..EEEE CS
                  B3  87 rsefelvvkv 96 
                          +e++l++ +
  Gorai.008G185900.1 284 GTEKQLYIDW 293
                         5666677766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.33E-2664122No hitNo description
PfamPF008478.5E-964112IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-1764121IPR016177DNA-binding domain
PROSITE profilePS5103220.12665120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-2065121IPR001471AP2/ERF domain
SMARTSM003803.3E-2965126IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.9E-42188296IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-31191294IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-27192287No hitNo description
PfamPF023622.2E-29193294IPR003340B3 DNA binding domain
PROSITE profilePS5086314.283193295IPR003340B3 DNA binding domain
SMARTSM010195.7E-25193297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDGSSIDEST TSDSISVSIA PSNISPLPQL TKSPDSLYRV GSGTSVIVDS ESGVEAESRK  60
LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA KAYDIAAQRF RGRDAVTNFK  120
HLHEMEDDDI QIAFLNSHSK AEIVDMLRKH TYNDELEQSR RSYGFDGNGK RIVRKEDGFG  180
TLGFELKARE QLFEKAVTPS DVGKLNRLVI PKQHAEKYFP LQSGSASSKG VLLNFEDVTG  240
KVWRFRYSYW NSSQSYVLTK GWSRFVKEKK LKAGDIVSFQ RSTGTEKQLY IDWKARTGLG  300
SGLENPVQMV RLFGVNIFKM PGSENVGLAG GCNGKRTREM ELLELECSKK QRVIDAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5919029811119DNA-binding protein RAV1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in all tissues examined: Roots, rosette leaves, cauline leaves, inflorescence stems, flowers and siliques. Highest expression in roots and rosette leaves. Very low expression in flowers. {ECO:0000269|PubMed:9862967}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8018190.0KJ801819.1 Gossypium hirsutum RAV protein (RAV1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314440.10.0AP2/ERF and B3 domain-containing transcription factor RAV1
RefseqXP_012438643.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-156RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A0D2T8E30.0A0A0D2T8E3_GOSRA; Uncharacterized protein
TrEMBLA0A0D3QR470.0A0A0D3QR47_GOSHI; RAV protein
STRINGGorai.008G185900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-154related to ABI3/VP1 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  3. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  4. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  5. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]