PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G185500.1
Common NameB456_008G185500, LOC105764557
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 380aa    MW: 41885.4 Da    PI: 7.1357
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G185500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.11.7e-32213268156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Gorai.008G185500.1 213 KQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 268
                         79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-29210271IPR009057Homeodomain-like
PROSITE profilePS5129414.185210270IPR017930Myb domain
SuperFamilySSF466892.3E-18211271IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-27213268IPR006447Myb domain, plants
PfamPF002491.5E-7215266IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0055062Biological Processphosphate ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MIEMDYALKK RRCHEYVEAL EEERRKIQVF QRELPLCLEL VNQAIEAHKK EMSGGSTTTD  60
YMQGQSDCSE QTTSDVPVLE EFIPIKRSSN CSEEDDEQES HKSKETNVPA AVDKRKSDWL  120
RSVQLWNNNQ SPDLPLNEDD GKIGSAIEVK KNGGAFQPFQ KEKTVEMSGQ SAVGKTNGSA  180
TSTCTTESGS RGGEANNANK SKTEEKEGQA SRKQRRCWSP ELHRRFLHAL QQLGGSHVAT  240
PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPTVHNNA NPQAPQFVVV GGIWVPPPDY  300
STMTTTTTST KTATVTPTSG IYTPVAAPLP ALPQPSGTMA QRPQQSHSEE RGSHSEGRVQ  360
SNSPSISSST HTTTDSPAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-12213266255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-12213266255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-12213266154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-12213266154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-12213266154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-12213266154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-12213266255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-12213266255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-12213266255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-12213266255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-12213266255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-12213266255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269|PubMed:27016098}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00218DAPTransfer from AT1G68670Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269|PubMed:27016098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5264434e-61HQ526443.1 Gossypium herbaceum clone NBRI_D2_1421 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438639.10.0PREDICTED: transcription factor LUX-like
SwissprotQ8VZS31e-109HHO2_ARATH; Transcription factor HHO2
TrEMBLA0A0D2T8310.0A0A0D2T831_GOSRA; Uncharacterized protein
STRINGGorai.008G185500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34912863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.11e-109G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]
  3. Sun X, et al.
    The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides.
    J. Exp. Bot., 2018. 69(7): p. 1749-1764
    [PMID:29385617]