PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G182500.1
Common NameB456_008G182500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 388aa    MW: 43524.8 Da    PI: 9.8453
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G182500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-1168124155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  s+n  +r k  + g ++ +e Aa+a++ a+ k++g
  Gorai.008G182500.1  68 SRFRGVSRHRWTGRFEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAAIKYWG 124
                         789******************88887786625555.********************98 PP
2AP249.61e-15167218155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Gorai.008G182500.1 167 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 218
                         79****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-868124IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-1468134IPR016177DNA-binding domain
CDDcd000181.15E-1668134No hitNo description
Gene3DG3DSA:3.30.730.109.4E-1269133IPR001471AP2/ERF domain
PROSITE profilePS5103217.85969132IPR001471AP2/ERF domain
SMARTSM003803.3E-1769138IPR001471AP2/ERF domain
PRINTSPR003672.8E-57081IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-17167228IPR016177DNA-binding domain
PfamPF008471.9E-11167218IPR001471AP2/ERF domain
CDDcd000181.62E-22167228No hitNo description
PROSITE profilePS5103218.703168226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-18168227IPR001471AP2/ERF domain
SMARTSM003807.1E-25168232IPR001471AP2/ERF domain
PRINTSPR003672.8E-5208228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEIVTAKSEF RPGRTRLCTA EDNAIDTKCI KRRRRDHSNG ALGLSNQQQQ HQQLQGDQPT  60
ATTVKRSSRF RGVSRHRWTG RFEAHLWDKG SWNPTQRKKG KQGAYDEEES AARAYDLAAI  120
KYWGTSTFTN FPVSDYGTEI EIMRSVTKEE YLASLRRRSS GFSRGVSRYR GVARHHHNGR  180
WEARIGRVFG NKYLYLGTYS TQEEAAHAYD IAAIEYRGIN AVTNFDLSTY IRWLKPGAND  240
ALISEQIKTA SATRPMMTSN IFPTEQTNGL TLFNSNPLTE EAIDIRKKGV VSPCPKSSPA  300
LSLLLRSSMF NKLVEQNLNA NYDQTEEKVA VDKNGGGEML CNEVDGGVLP FMCSNNRGLE  360
SKESKVPLYN KTGQSMWNGA LNLLTNA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193101PTQRKKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435571.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A0D2T8890.0A0A0D2T889_GOSRA; Uncharacterized protein
STRINGGorai.008G182500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-72AP2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]