PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G180400.2

Common Name

B456_008G180400, LOC105764507

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 307aa MW: 33838.6 Da PI: 9.7398

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G180400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2.1e-39	49	109	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt GGa+rnvPvG+grrk k+ss Gorai.008G180400.2 49 PDKILPCPRCNSKETKFCYYNNYNVNQPRHFCKNCQRYWTDGGAMRNVPVGAGRRKTKSSS 109 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	46	106	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-31	51	107	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.696	53	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	55	91	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MFLNLQEKNE EDDRGSRVPL SERKPSSLES SKNEEKSETN SQEKALKKPD KILPCPRCNS 60 KETKFCYYNN YNVNQPRHFC KNCQRYWTDG GAMRNVPVGA GRRKTKSSSS SLHYHHVMIS 120 EAILGAQASA VNQASGDSCV FTFGSDSSVF SLPRLPPSTL YRPGFPASFY SSPTYRPSVV 180 PVATLSSASI NQCAPNTESS SPTPTWPALG KHSRDEKGKP SADSNISERR ASSNSKALRI 240 GDDTEETAKS SMLATLRIKT KNTNSGIFDG FQSKTSDDRN YRLTTFSMLR ANPAALSRSL 300 HFHENT*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269\|PubMed:19619493}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438554.1	0.0	PREDICTED: cyclic dof factor 1-like isoform X2
Swissprot	Q93ZL5	8e-58	CDF2_ARATH; Cyclic dof factor 2
TrEMBL	A0A0D2T2G1	0.0	A0A0D2T2G1_GOSRA; Uncharacterized protein
STRING	Gorai.008G180400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-57	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Gorai.008G180400.2
Entrez Gene	105764507

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]