PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G180400.1

Common Name

B456_008G180400, LOC105764507

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 363aa MW: 39700.1 Da PI: 9.1631

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G180400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	105	165	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt GGa+rnvPvG+grrk k+ss Gorai.008G180400.1 105 PDKILPCPRCNSKETKFCYYNNYNVNQPRHFCKNCQRYWTDGGAMRNVPVGAGRRKTKSSS 165 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-29	102	162	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-31	107	163	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.696	109	163	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	111	147	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MSELNDSSSI KLFGKMIPLL TFNQDETLVL DSSNGHLLSS SNSLGAVNSN HGLPLQAPIE 60 DKEKNEEDDR GSRVPLSERK PSSLESSKNE EKSETNSQEK ALKKPDKILP CPRCNSKETK 120 FCYYNNYNVN QPRHFCKNCQ RYWTDGGAMR NVPVGAGRRK TKSSSSSLHY HHVMISEAIL 180 GAQASAVNQA SGDSCVFTFG SDSSVFSLPR LPPSTLYRPG FPASFYSSPT YRPSVVPVAT 240 LSSASINQCA PNTESSSPTP TWPALGKHSR DEKGKPSADS NISERRASSN SKALRIGDDT 300 EETAKSSMLA TLRIKTKNTN SGIFDGFQSK TSDDRNYRLT TFSMLRANPA ALSRSLHFHE 360 NT*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MSELNDSSSI KLFGKMIPLL TFNQDETLVL DSSNGHLLSS SNSLGAVNSN HGLPLQAPIE  60
DKEKNEEDDR GSRVPLSERK PSSLESSKNE EKSETNSQEK ALKKPDKILP CPRCNSKETK  120
FCYYNNYNVN QPRHFCKNCQ RYWTDGGAMR NVPVGAGRRK TKSSSSSLHY HHVMISEAIL  180
GAQASAVNQA SGDSCVFTFG SDSSVFSLPR LPPSTLYRPG FPASFYSSPT YRPSVVPVAT  240
LSSASINQCA PNTESSSPTP TWPALGKHSR DEKGKPSADS NISERRASSN SKALRIGDDT  300
EETAKSSMLA TLRIKTKNTN SGIFDGFQSK TSDDRNYRLT TFSMLRANPA ALSRSLHFHE  360
NT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438553.1	0.0	PREDICTED: cyclic dof factor 1-like isoform X1
TrEMBL	A0A0D2U581	0.0	A0A0D2U581_GOSRA; Uncharacterized protein
STRING	Gorai.008G180400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18962	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-57	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Gorai.008G180400.1
Entrez Gene	105764507

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]