PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G172800.2
Common NameB456_008G172800, LOC105764421
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 760aa    MW: 82663.6 Da    PI: 5.8672
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G172800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1994149156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++e+e++F+++++p+ ++r+eL + lgL+  qVk+WFqN+R+++k
  Gorai.008G172800.2  94 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRVLGLEPLQVKFWFQNKRTQMK 149
                         688999***********************************************999 PP
2START219.98.4e-692774971206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         ela +a++elvk+a+++ep+W++s     + +n++e++++f+++ +     ++gea++++ vv+m++  lve+l+d+  qW++ +     k
  Gorai.008G172800.2 277 ELAVAAMEELVKMAQVGEPLWMTSLdgstSVLNEEEYIRTFPRGIGpkptgFKGEASKETCVVIMNHISLVEILMDVH-QWSTVFSaivsK 366
                         57899********************999999************999********************************.************ PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                         a+tl+v+s+g      galq+m+ae+q++splvp R++++vRy++ + +g+w++vdvS+d+ +++p     +R++++pSg+li++++ng+s
  Gorai.008G172800.2 367 ASTLDVLSTGiagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKHDAEGTWAVVDVSLDNIRPNPA----MRCRRRPSGCLIQEMPNGYS 453
                         ******************************************************************5....******************** PP

                         EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         kvtw+ehv+ ++r +h+l+++lv+sg+a+gak+w atl+rqce+
  Gorai.008G172800.2 454 KVTWIEHVEIDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCER 497
                         ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-2275149IPR009057Homeodomain-like
SuperFamilySSF466897.94E-1982151IPR009057Homeodomain-like
PROSITE profilePS5007116.29391151IPR001356Homeobox domain
SMARTSM003891.9E-1892155IPR001356Homeobox domain
CDDcd000867.06E-1894152No hitNo description
PfamPF000463.8E-1794149IPR001356Homeobox domain
PROSITE profilePS5084845.113268500IPR002913START domain
SuperFamilySSF559615.68E-35269499No hitNo description
CDDcd088751.12E-127272496No hitNo description
SMARTSM002348.3E-63277497IPR002913START domain
PfamPF018523.8E-58278497IPR002913START domain
Gene3DG3DSA:3.30.530.208.3E-6373491IPR023393START-like domain
SuperFamilySSF559615.86E-23517751No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MPAGVMVPTR NMPSMISGNG NVGGFGTISG LTLGQPNNNM MEGQLHPFEM TQNTSESEIA  60
RMRDEEFDSA LKSGSENHEG VSGDDDQDTR PNKKKRYHRH TQHQIQEMEA FFKECPHPDD  120
KQRKELGRVL GLEPLQVKFW FQNKRTQMKT QHERQENSQL RAENEKLRAD NMRYREALST  180
ASCPNCGGPT AVGQMSFDEH HLRLENARLR EEIDRISAIA AKYVGKPVVS YPLLSSPMTP  240
RPLDFGSQTG SGEMYGAGEL LRSINAPAEA DKPMIIELAV AAMEELVKMA QVGEPLWMTS  300
LDGSTSVLNE EEYIRTFPRG IGPKPTGFKG EASKETCVVI MNHISLVEIL MDVHQWSTVF  360
SAIVSKASTL DVLSTGIAGN YNGALQVMTA EFQVPSPLVP TRESYYVRYC KHDAEGTWAV  420
VDVSLDNIRP NPAMRCRRRP SGCLIQEMPN GYSKVTWIEH VEIDDRGVHN LYKQLVSSGH  480
AFGAKRWIAT LDRQCERLAS LMATNIPTGD AGVITNQDGR KSMLKLAERM VISFCAGVGA  540
STAHTWTTLS GTGADDVRVM TRKSVDDPGR PPGIVLSAAT SFWLPVSPKR VFDFLRDENS  600
RNEWDILSNG GVAQEMAHIA NGRDTGNCVS LLRVNSANSS QTNMLILQES CTDPTASFVI  660
YAPVDIVAMN VVLNGGDPDY VALLPSGFAI LPDGSSGSTG SGMADAGGSS GGSLLTVAFQ  720
ILVDSVPTAK LSLGSVATVN NLIACTVERI KASLSCENA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438429.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0D2PWD50.0A0A0D2PWD5_GOSRA; Uncharacterized protein
STRINGGorai.008G172800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]