PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G172800.1
Common NameB456_008G172800, LOC105764421
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 761aa    MW: 82791.7 Da    PI: 5.8672
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G172800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1995150156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++e+e++F+++++p+ ++r+eL + lgL+  qVk+WFqN+R+++k
  Gorai.008G172800.1  95 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRVLGLEPLQVKFWFQNKRTQMK 150
                         688999***********************************************999 PP
2START219.98.4e-692784981206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         ela +a++elvk+a+++ep+W++s     + +n++e++++f+++ +     ++gea++++ vv+m++  lve+l+d+  qW++ +     k
  Gorai.008G172800.1 278 ELAVAAMEELVKMAQVGEPLWMTSLdgstSVLNEEEYIRTFPRGIGpkptgFKGEASKETCVVIMNHISLVEILMDVH-QWSTVFSaivsK 367
                         57899********************999999************999********************************.************ PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                         a+tl+v+s+g      galq+m+ae+q++splvp R++++vRy++ + +g+w++vdvS+d+ +++p     +R++++pSg+li++++ng+s
  Gorai.008G172800.1 368 ASTLDVLSTGiagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKHDAEGTWAVVDVSLDNIRPNPA----MRCRRRPSGCLIQEMPNGYS 454
                         ******************************************************************5....******************** PP

                         EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         kvtw+ehv+ ++r +h+l+++lv+sg+a+gak+w atl+rqce+
  Gorai.008G172800.1 455 KVTWIEHVEIDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCER 498
                         ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-2276150IPR009057Homeodomain-like
SuperFamilySSF466897.94E-1983152IPR009057Homeodomain-like
PROSITE profilePS5007116.29392152IPR001356Homeobox domain
SMARTSM003891.9E-1893156IPR001356Homeobox domain
PfamPF000463.8E-1795150IPR001356Homeobox domain
CDDcd000867.08E-1895153No hitNo description
PROSITE profilePS5084845.113269501IPR002913START domain
SuperFamilySSF559615.68E-35270500No hitNo description
CDDcd088751.13E-127273497No hitNo description
SMARTSM002348.3E-63278498IPR002913START domain
PfamPF018523.8E-58279498IPR002913START domain
Gene3DG3DSA:3.30.530.208.3E-6374492IPR023393START-like domain
SuperFamilySSF559615.86E-23518752No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MPAGVMVPTR NMPSMISGNG NVGGFGTISG LTLGQQPNNN MMEGQLHPFE MTQNTSESEI  60
ARMRDEEFDS ALKSGSENHE GVSGDDDQDT RPNKKKRYHR HTQHQIQEME AFFKECPHPD  120
DKQRKELGRV LGLEPLQVKF WFQNKRTQMK TQHERQENSQ LRAENEKLRA DNMRYREALS  180
TASCPNCGGP TAVGQMSFDE HHLRLENARL REEIDRISAI AAKYVGKPVV SYPLLSSPMT  240
PRPLDFGSQT GSGEMYGAGE LLRSINAPAE ADKPMIIELA VAAMEELVKM AQVGEPLWMT  300
SLDGSTSVLN EEEYIRTFPR GIGPKPTGFK GEASKETCVV IMNHISLVEI LMDVHQWSTV  360
FSAIVSKAST LDVLSTGIAG NYNGALQVMT AEFQVPSPLV PTRESYYVRY CKHDAEGTWA  420
VVDVSLDNIR PNPAMRCRRR PSGCLIQEMP NGYSKVTWIE HVEIDDRGVH NLYKQLVSSG  480
HAFGAKRWIA TLDRQCERLA SLMATNIPTG DAGVITNQDG RKSMLKLAER MVISFCAGVG  540
ASTAHTWTTL SGTGADDVRV MTRKSVDDPG RPPGIVLSAA TSFWLPVSPK RVFDFLRDEN  600
SRNEWDILSN GGVAQEMAHI ANGRDTGNCV SLLRVNSANS SQTNMLILQE SCTDPTASFV  660
IYAPVDIVAM NVVLNGGDPD YVALLPSGFA ILPDGSSGST GSGMADAGGS SGGSLLTVAF  720
QILVDSVPTA KLSLGSVATV NNLIACTVER IKASLSCENA *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438427.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0D2T7H50.0A0A0D2T7H5_GOSRA; Uncharacterized protein
STRINGGorai.008G172800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]