PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G170800.1
Common NameB456_008G170800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 358aa    MW: 41231.1 Da    PI: 4.362
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G170800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.47.5e-36151072103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k ye+++de+++++isw++n++sfv++d++ef+ ++Lp+yFkhsnf+SF+RQLn+YgF+k+++++         weF+++ F +g+k+
  Gorai.008G170800.1  15 FLRKCYEMVDDEATNSIISWTQNNDSFVIWDMTEFSVRLLPQYFKHSNFSSFIRQLNIYGFRKIDTDR---------WEFANDGFVRGQKD 96 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i r+k +
  Gorai.008G170800.1  97 LLKNIARRKYS 107
                         *******9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.0E-3711104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.9E-5511104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.08E-3511104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-181538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-185365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVKPNETGCQ SIAPFLRKCY EMVDDEATNS IISWTQNNDS FVIWDMTEFS VRLLPQYFKH  60
SNFSSFIRQL NIYGFRKIDT DRWEFANDGF VRGQKDLLKN IARRKYSQGP EQRKSLQQQQ  120
QPENSVGSFE NNENNRLWNE VENLKTDKNA LTQELVKLGQ YQQIADNKLL LLKDRLQGME  180
KSQQQLLSFL IMAMQSPGFL VQLIQPKENN WRMTEANNML EQVSEDTEPV ASEHMIVRYQ  240
PPTIETSKPV LTPIIDSENP HESETKDFWM DIDFVKALMD ESHTPFLPPD LHDDGAWEKL  300
LANDFQGNND DDGNRDEDGS LYSGMGMEIT GSGALLEKTC SFELLLQNYE EITKSGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-23210416129Heat shock factor protein 1
5d5v_B1e-23210416129Heat shock factor protein 1
5d5v_D1e-23210416129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674050.0KR067405.1 Gossypium hirsutum HSF24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314435.10.0heat stress transcription factor A-8-like
SwissprotQ9S7U51e-103HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A0D2U4P10.0A0A0D2U4P1_GOSRA; Uncharacterized protein
STRINGGorai.008G170800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-105heat shock transcription factor A8
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]