PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G166000.5

Common Name

B456_008G166000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 279aa MW: 30132.6 Da PI: 9.1678

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G166000.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	49	1.6e-15	46	76	48	78
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh+l efDe krsCr+rL++hn+rrrk+q+ Gorai.008G166000.5 46 RFHSLVEFDEVKRSCRKRLDGHNRRRRKPQP 76 9***************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	12.118	1	74	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.08E-12	46	80	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.5E-8	46	73	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MVALRTSANA GTTIDAIKYA KSTLRPPKLL LGVKNSAFAS SVAVLRFHSL VEFDEVKRSC 60 RKRLDGHNRR RRKPQPDFMS VNSGRFPYNH QGTRYFPIGS SQMHSWMGGV KVESDMKLIN 120 FSGGNSLFPG FSSDNHHKGE KHFSFLQTTA SSHPGSGSLC QPFFEASSSG DNSRKMFSDG 180 LNQAIDSDRA LSLLSSQPAE TREIGLSPMV QPASASFVIP NLQFNDVGGM GGEPVGTSIL 240 DADGGGNNSH LQGHEMFQNE HLGSSATGAH HTLSFSWE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	73	KRSCRKRLDGHNRRRRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622327	0.0	KJ622327.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL19) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438339.1	1e-174	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_012438340.1	1e-174	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_012438341.1	1e-174	PREDICTED: squamosa promoter-binding-like protein 16
Refseq	XP_012438342.1	1e-174	PREDICTED: squamosa promoter-binding-like protein 16
TrEMBL	A0A0D2T784	0.0	A0A0D2T784_GOSRA; Uncharacterized protein
STRING	Gorai.008G166000.1	1e-173	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	5e-15	SBP family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G166000.5

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]