PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.008G166000.2 | ||||||||
Common Name | B456_008G166000, LOC105764349 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 303aa MW: 33199.8 Da PI: 8.4275 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132 | 2e-41 | 24 | 100 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCevhsk+p+v+++g+eqrfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+ Gorai.008G166000.2 24 CLVDGCTADLSKCRDYHRRHKVCEVHSKTPKVTIRGQEQRFCQQCSRFHSLVEFDEVKRSCRKRLDGHNRRRRKPQP 100 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.5E-34 | 17 | 85 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.009 | 21 | 98 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.89E-39 | 22 | 104 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.2E-30 | 24 | 97 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 303 aa Download sequence Send to blast |
MESSSSASFK RARAPATGNQ LPSCLVDGCT ADLSKCRDYH RRHKVCEVHS KTPKVTIRGQ 60 EQRFCQQCSR FHSLVEFDEV KRSCRKRLDG HNRRRRKPQP DFMSVNSGRF PYNHQGTRYF 120 PIGSSQMHSW MGGVKVESDM KLINFSGGNS LFPGFSSDNH HKGEKHFSFL QTTASSHPGS 180 GSLCQPFFEA SSSGDNSRKM FSDGLNQAID SDRALSLLSS QPAETREIGL SPMVQPASAS 240 FVIPNLQFND VGGMGGEPVG TSILDADGGG NNSHLQGHEM FQNEHLGSSA TGAHHTLSFS 300 WE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 21 | 97 | 8 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 80 | 97 | KRSCRKRLDGHNRRRRKP |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. | |||||
Uniprot | TISSUE SPECIFICITY: Strongly expressed in immature ears and weakly in husks. Found in the inflorescence meristem of the developing ear, in the spikelet pair primordia, the glume primordia, the cupule forming region and other floral organs. Not detected in other tissues. {ECO:0000250|UniProtKB:Q49I55}. | |||||
Uniprot | TISSUE SPECIFICITY: Strongly expressed in immature ears and weakly in husks. Found in the inflorescence meristem of the developing ear, in the spikelet pair primordia, the glume primordia, the cupule forming region and other floral organs. Not detected in other tissues. {ECO:0000269|PubMed:16079849}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | SBP transcriptional regulator probably involved in the domestication of maize. Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif. May repress the growth of lateral branches in length and numbers. {ECO:0000250|UniProtKB:Q49I55}. | |||||
UniProt | SBP transcriptional regulator probably involved in the domestication of maize (PubMed:16079849). Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif (PubMed:25943393). May repress the growth of lateral branches in length and numbers (PubMed:25943393). {ECO:0000269|PubMed:16079849, ECO:0000269|PubMed:25943393}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ622327 | 0.0 | KJ622327.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL19) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012438339.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_012438340.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_012438341.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_012438342.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q49I55 | 5e-58 | TGA1W_MAIZE; Teosinte glume architecture 1 | ||||
Swissprot | Q49I57 | 4e-58 | TGA1B_MAIZE; Teosinte glume architecture 1 | ||||
Swissprot | Q6YZE8 | 6e-58 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A0D2U4F5 | 0.0 | A0A0D2U4F5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G166000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50670.1 | 3e-47 | SBP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.008G166000.2 |
Entrez Gene | 105764349 |