PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G163200.4 | ||||||||
Common Name | B456_008G163200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 226aa MW: 26511.2 Da PI: 7.7755 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 88.9 | 5.5e-28 | 72 | 153 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y++++e Gorai.008G163200.4 72 WVQDETRSLIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEIE 153 ********************************************************************84...556899***998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-5 | 62 | 133 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.409 | 64 | 128 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.8E-4 | 68 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 4.40E-29 | 70 | 135 | No hit | No description |
Pfam | PF13837 | 1.0E-21 | 71 | 155 | No hit | No description |
SuperFamily | SSF46689 | 7.65E-5 | 71 | 132 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MYLSEKPRSI DLYKEEGPAT ARDMIIDVTT NGDLPPHHHH HHPPPHQQQM ILGESSCEDP 60 EVKAPKKRAE TWVQDETRSL IAFRREMDGL FNTSKSNKHL WEQISAKMRE KGFDRSPTMC 120 TDKWRNLLKE FKKAKHQDRG SGSAKMSYYK EIEEILRERT KNAYKSPTPP PKVDSYMHFA 180 DKGFEDAGMS FGPVEGYYFL FQFEIALFWF FFFYLFGFLS FIFFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 4e-54 | 66 | 151 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012438312.1 | 1e-145 | PREDICTED: trihelix transcription factor GT-1-like isoform X2 | ||||
Swissprot | Q9FX53 | 8e-86 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A0D2PVW5 | 1e-168 | A0A0D2PVW5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G163200.1 | 1e-143 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.3 | 1e-91 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G163200.4 |
Publications ? help Back to Top | |||
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