PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G163200.3

Common Name

B456_008G163200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 318aa MW: 36213.8 Da PI: 7.2647

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G163200.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88	1.1e-27	72	153	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y++++e Gorai.008G163200.3 72 WVQDETRSLIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEIE 153 ******************************************************************84...556899*998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-4	62	133	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.409	64	128	IPR017877	Myb-like domain
SMART	SM00717	1.8E-4	68	130	IPR001005	SANT/Myb domain
CDD	cd12203	5.69E-29	70	135	No hit	No description
SuperFamily	SSF46689	6.42E-5	71	132	IPR009057	Homeodomain-like
Pfam	PF13837	2.0E-21	71	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MYLSEKPRSI DLYKEEGPAT ARDMIIDVTT NGDLPPHHHH HHPPPHQQQM ILGESSCEDP 60 EVKAPKKRAE TWVQDETRSL IAFRREMDGL FNTSKSNKHL WEQISAKMRE KGFDRSPTMC 120 TDKWRNLLKE FKKAKHQDRG SGSAKMSYYK EIEEILRERT KNAYKSPTPP PKVDSYMHFA 180 DKGFEDAGMS FGPVEASGRP ILNLERRLDH DGHPLAIAAA DAVADSGVPP WNWRETPGNG 240 VDCQAYGGRV ITVKFGEYSR RIGIDGSADA IREAIKSAFR LRTKRAFLLE DEDHIVRSLD 300 REMPLGNYTL HLDEEHR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	3e-53	66	151	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU896413	3e-40	KU896413.1 Hibiscus cannabinus microsatellite HC_ES_37_CTC sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438311.1	0.0	PREDICTED: trihelix transcription factor GT-1-like isoform X1
Swissprot	Q9FX53	1e-158	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A0D2RGE9	0.0	A0A0D2RGE9_GOSRA; Uncharacterized protein
STRING	Gorai.008G163200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-154	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G163200.3

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]