PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G159000.8

Common Name

B456_008G159000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 463aa MW: 52614.4 Da PI: 8.0168

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G159000.8	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.3e-11	287	330	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + Er+RR++i++++++Lr l+Pk + K++ +iL+ A+eYI +Lq Gorai.008G159000.8 287 ITERNRRKKIKDGLFKLRALVPKiS------KMDITAILTDAMEYIGNLQ 330 68*******************66......**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	6.7E-18	11	158	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	3.93E-13	276	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.919	280	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.11E-10	283	334	No hit	No description
SMART	SM00353	4.7E-11	286	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-13	287	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.2E-9	287	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MRGFERAVEW LRSFVYSNAW DFCVVWKLGD DPSRFIEWKD CCCSGGINVK VEQDKLQLQG 60 PPLCRDAQFQ HSIRSKACEA LSHFPFAVSL YAGENRIHGE VAISSQPKWL NHANISTSLS 120 SEETMGTQVL IPVFGGLIEL FASKNIPKDQ NIVELIRTEC NALLKAETTT AESYRKANLH 180 KWYLNTLQEK DLPFSMSLST VNPRIQFIPS IGHPPFSSAS AYISQDEQLK QPIGTYYGTK 240 RLGCSQNVCA QQTEIGLVLD CKVNSVNDKM RTAKQPEKVN YHSKNLITER NRRKKIKDGL 300 FKLRALVPKI SKMDITAILT DAMEYIGNLQ EEEKKLRNEL KETEEGDCGK SNAELKSAKL 360 DWLHRKNMST IEENHIPSGI SEMAKIEVHV EVNQITKREF WIKLCYKHKR SGFAKLMEGM 420 DSLGLGVIDA NITTFNGNVL NIFKVEVRLT EWLMSMEQYE FS*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MRGFERAVEW LRSFVYSNAW DFCVVWKLGD DPSRFIEWKD CCCSGGINVK VEQDKLQLQG  60
PPLCRDAQFQ HSIRSKACEA LSHFPFAVSL YAGENRIHGE VAISSQPKWL NHANISTSLS  120
SEETMGTQVL IPVFGGLIEL FASKNIPKDQ NIVELIRTEC NALLKAETTT AESYRKANLH  180
KWYLNTLQEK DLPFSMSLST VNPRIQFIPS IGHPPFSSAS AYISQDEQLK QPIGTYYGTK  240
RLGCSQNVCA QQTEIGLVLD CKVNSVNDKM RTAKQPEKVN YHSKNLITER NRRKKIKDGL  300
FKLRALVPKI SKMDITAILT DAMEYIGNLQ EEEKKLRNEL KETEEGDCGK SNAELKSAKL  360
DWLHRKNMST IEENHIPSGI SEMAKIEVHV EVNQITKREF WIKLCYKHKR SGFAKLMEGM  420
DSLGLGVIDA NITTFNGNVL NIFKVEVRLT EWLMSMEQYE FS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438254.1	0.0	PREDICTED: transcription factor bHLH90-like isoform X2
TrEMBL	A0A0D2T1B2	0.0	A0A0D2T1B2_GOSRA; Uncharacterized protein
STRING	Gorai.008G159000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	6e-70	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G159000.8

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]