PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G157500.4 | ||||||||
Common Name | B456_008G157500, LOC105764252 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 306aa MW: 33922 Da PI: 8.0375 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 46.7 | 5.3e-15 | 226 | 251 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd C+FaHg Gorai.008G157500.4 226 FKTELCNKWQETGACPYGDHCQFAHG 251 79***********************8 PP | |||||||
2 | zf-CCCH | 18.7 | 3.1e-06 | 264 | 288 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr +++ C+yG rC+F H Gorai.008G157500.4 264 YKTEVCRMVLAGDVCPYGHRCHFRH 288 9**********55**********88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-19 | 220 | 258 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-11 | 222 | 257 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-9 | 225 | 252 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.286 | 225 | 253 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-12 | 226 | 251 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.26E-8 | 259 | 294 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-12 | 259 | 292 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-4 | 263 | 290 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.821 | 263 | 291 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MQNDNFATVY GDLAAKQSKD HQSDGVFSSS TTSSSTSAAS VFALYHPRIL MQQHQDMINR 60 HNLCLTRLRE AAKEAEALRQ ENTSLRSANR DLNKQLSALI QASVQNHFSS SDYNTTPFEL 120 VNALRGLCLG SGGGGEVDVS DESPTSVMEG GAVDVERVML PKSISVRSNG YLKMMNQAGA 180 SHRGKTRGPT RTGNTSQLSG AQKVYVQGGK KEEEPLELEV YNQGMFKTEL CNKWQETGAC 240 PYGDHCQFAH GIEELRPVIR HPRYKTEVCR MVLAGDVCPY GHRCHFRHAL TEQEKFMDHL 300 KPRNR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 4e-22 | 226 | 292 | 4 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00383 | ampDAP | Transfer from AT1G68200 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX577460 | 1e-112 | JX577460.1 Gossypium hirsutum clone NBRI_GE9285 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012438228.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 15-like isoform X2 | ||||
Swissprot | Q9C9F5 | 5e-94 | C3H15_ARATH; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A0D2PVP4 | 0.0 | A0A0D2PVP4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G157500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 1e-76 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G157500.4 |
Entrez Gene | 105764252 |
Publications ? help Back to Top | |||
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