PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G157300.1 | ||||||||
Common Name | B456_008G157300, LOC105764247 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 299aa MW: 31748.5 Da PI: 10.3948 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.8 | 7.9e-38 | 56 | 157 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqq++p+i+++tgt++++as+ a++s+ +++ns s+ Gorai.008G157300.1 56 APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPASALaAAGASVCAQGNSVSAglh 146 789****************************************************************997775555555555543333444 PP TCP 89 ..........k 89 + Gorai.008G157300.1 147 tkmglgactgS 157 44445444440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.8E-31 | 61 | 165 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.613 | 62 | 116 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MEPKGKGKGK GKGSNHHPQE VPTCLTPQKA ENNKPAEIKN LQIMIASKDD NKKQLAPKRS 60 SNKDRHKKVD GRGRRIRMPA LCAARIFQLT RELGHKSDGE TIQWLLQQSE PSIIAATGTG 120 TIPASALAAA GASVCAQGNS VSAGLHTKMG LGACTGSKDR NNWAMLGGNL GRSQIPSGAW 180 SSSNGIGSGL VQVSEQSTSA SNFGNENSNH IHHNYGFQGL EFPNMNMGFV SFSSLLNGSN 240 LQVPGLELGL SQDPHFGVSN SQAFSHFYQQ IGQQRGGVRP LNQQQIVADK DNSQGSKQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00641 | PBM | Transfer from Manes.12G007700 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012438222.1 | 0.0 | PREDICTED: transcription factor TCP20-like | ||||
Refseq | XP_012438223.1 | 0.0 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 3e-69 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A0D2PVP2 | 0.0 | A0A0D2PVP2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G157300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4050 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 5e-71 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G157300.1 |
Entrez Gene | 105764247 |