PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G155600.1
Common NameB456_008G155600, LOC105762188
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 272aa    MW: 30008.5 Da    PI: 4.5452
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G155600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-173079255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +gr++AeIrdps+   + r++lg+f+tae+Aa a+++a ++++g
  Gorai.008G155600.1 30 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEDAALAYDRASRSMRG 79
                        678******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.50E-292986No hitNo description
PROSITE profilePS5103220.2053087IPR001471AP2/ERF domain
SMARTSM003805.0E-333093IPR001471AP2/ERF domain
PfamPF008471.7E-103179IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-203188IPR016177DNA-binding domain
PRINTSPR003676.2E-83142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-283187IPR001471AP2/ERF domain
PRINTSPR003676.2E-85369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDLSNSKSSS SKSKRKQQPQ HQQQQQQETR FLGVRRRPWG RYAAEIRDPS TKERHWLGTF  60
DTAEDAALAY DRASRSMRGS KARTNFVYSD MPAGSSVTSI ISPDEFQHDI SSIFSINPPF  120
HHQNDANHNQ IFFNQDPFNA CQFYSGLPAQ ESDAVQSYRP ITGLMEAGNG GSPQFRDNSS  180
ELPPLPPDVS STCYGYGSGV DGSDMGYGAW NDTGLFGFSD QNSNGFDSYV GFNSFELEQD  240
SPLLENMPLP SLPDSVADAF DLGSSSTNFF Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-203186359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5783125e-97JX578312.1 Gossypium hirsutum clone NBRI_GE10307 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435538.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
SwissprotQ9FZ902e-49ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A0D2T6S40.0A0A0D2T6S4_GOSRA; Uncharacterized protein
STRINGGorai.008G155600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.14e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]