PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G155200.1
Common NameB456_008G155200, LOC105764224
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 289aa    MW: 32683.9 Da    PI: 9.3222
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G155200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.83.2e-34591991128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....tk 79 
                         lp+G++F+Ptd+el+ e+L+ kv+++       ++++   i+   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+    t+
  Gorai.008G155200.1  59 LPAGVKFDPTDQELL-EHLEGKVRSDArklhplIDEFIPtIEGEnGICYTHPEKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKvhtdTE 147
                         799************.99******9996665443332333665557**********.555666688******************7455533 PP

                 NAM  80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+++v+  +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Gorai.008G155200.1 148 ggETRWHKTGKTRPVFI-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 199
                         44667************.9*************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3854218IPR003441NAC domain
PROSITE profilePS510053459218IPR003441NAC domain
PfamPF023656.7E-1660199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MTWCNDCSDV QTIERSSPPS SHKTVIAQRH KDCLLRACPS CGHQIKYRDQ GGIHDLPGLP  60
AGVKFDPTDQ ELLEHLEGKV RSDARKLHPL IDEFIPTIEG ENGICYTHPE KLPGVSKDGL  120
VRHFFHRPSK AYTTGTRKRR KVHTDTEGGE TRWHKTGKTR PVFIGGKVKG YKKILVLYTN  180
YGKQRKPEKT NWVMHQYHLG NNEEEKDGEL VISKVFYQTQ PRQCGSIKDS LKLQSGHEAS  240
HHLKNNNNNG LVEFYNPSFI SFDQGGQSRT NPTQLLPHFA VHDGSFIP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9141460.0JQ914146.1 Gossypium hirsutum NAC domain protein 15 (NAC15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438194.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-132NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0D2T6S00.0A0A0D2T6S0_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NDK50.0A0A1U8NDK5_GOSHI; NAC domain-containing protein 73-like
TrEMBLA0A2P5S2730.0A0A2P5S273_GOSBA; Uncharacterized protein
STRINGGorai.008G155200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-134NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]