PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G155100.4

Common Name

B456_008G155100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1411aa MW: 158804 Da PI: 5.9738

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G155100.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	29	83	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ ++yps+++r+eL+ +lgL++rq ++WF+ rR k++k Gorai.008G155100.4 29 KRKMKTASQLEVLEKTYATEMYPSEATRAELSVQLGLSDRQLQMWFCHRRLKDRK 83 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-18	12	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.55E-16	20	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.552	24	84	IPR001356	Homeobox domain
SMART	SM00389	1.8E-17	26	88	IPR001356	Homeobox domain
CDD	cd00086	5.10E-14	27	83	No hit	No description
Pfam	PF00046	2.8E-16	29	83	IPR001356	Homeobox domain
PROSITE profile	PS50827	17.347	547	606	IPR018501	DDT domain
SMART	SM00571	3.9E-23	547	606	IPR018501	DDT domain
Pfam	PF02791	9.7E-18	548	603	IPR018501	DDT domain
Pfam	PF05066	5.0E-13	729	797	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.3E-8	937	976	IPR028942	WHIM1 domain
Pfam	PF15613	8.9E-11	1120	1191	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1411 aa Download sequence Send to blast
METGGLSGGD GGSSEGEKKK PQEGEAKVKR KMKTASQLEV LEKTYATEMY PSEATRAELS 60 VQLGLSDRQL QMWFCHRRLK DRKAAPLKRQ RKDSTSSAHL VGVAGEEMGG SEAGNEHGLG 120 GSSFLGHGLD LKRVVPRAGM TIPRYYEMPH SMAELELRAI KFAELQLGEP IRDDGPMFGM 180 EFDPLPPGAF GAPIAVQQKQ PGGPFETKIY DRRDTKTVKG SVRAVCEYQF LLEQPTVRTE 240 TYGRFPLSVN YGLPTDGPNA RALSLAAGSS SLLGNEQVQP GYGFPGQIPN LNLLPQQSRP 300 GHLLPTASGE YDYVSRTNTS TNTALDANIG SHPISALGSP FVSSDRRVCL DDDVLRKERK 360 RKGEEDRIAR EIEAHEKRIR RELEKQDMLK RKREEQIRKE MRRHEHEKRK EEERLLREKH 420 REEERYQREQ RRELERREKF LMKESIRAER LRQKEELRKE KEAARLRAAN ERAIARKLAK 480 ESMEPVEDEY LELMEIATSS QGLSLTLPLG FEALQNLDIF RDKLCEFPPK TVQLKRPFSI 540 QPWNGSEENV GNLLMVWRFL ITFADVLGLW PFTLDELVQA FHDYDPRLLG EIHVALLRSI 600 IKDIEDVART PSTGAGASQN SAANPGGGHP QIVEGAYAWG FDIRSWQRHL NVLTWPEILR 660 QFALSAGFGP QLKKRNIEQP YLCDGNEGND GEDIITNLRN GAAAENAIAI MQERGFSNPC 720 RSRHRLTPGT VKFAAFHILS LEGSKGLTVL EVAEKIQKSG LRDLTTNKAQ EASIAAAFSR 780 DTKLFDRTAP STYCVRSPYR KDPADAEAIL SAARERIQVF KSEFLSVDAE VAERDEDSES 840 DIAEDPVVDD LGAEINAKKE IHNSEERSSS VRETISGKEE SGVMETPQVE VGNACKGLSS 900 PHSGGFDKVK HIDASTEQSA GAASAGQEDM EIDESNPGEL WVQGLMEGDY SDLSVEERLN 960 ALVALISIVI EGNFIRIVLK ERLEAANALK KQIWTEAQLD KRRMKEDFVL RTYYSYVRNP 1020 VKNRLVMTSA ECRESPQIIG DKKDHDSSVY HVVQQECLNN SQNDQNCLNN MSTEGNLPVQ 1080 DFSFGPDNLQ YQQPGYALDR SRSLLKSYIG HKAEEMYAYR SLPLGQDRRR NRYWRFTTTS 1140 CNDPGCGRIF IELLDGRWRL IDTEEGFGAL LSSLDVRGIR ESLLHAMLLK IEMSFKEAVA 1200 RNKLHVNERQ KGDTAKQKAN EMASGLDWSV YSESPSSILC GSDSDMPETS SFSIELGRDE 1260 NEKNNALKRY QDFEKWMWKG CFSSLTFSVT KYGERMCKEL LGVCDSCFNV YFVKDNHCPS 1320 CHTTYIASKS ALIFSEHVAQ CAQKMQMGAE LALDGSVFSP MRIRLIKLQL ALLEVSIPFE 1380 ALQSTWTEDY RNSWGMKLDS STTAEELLQE *

Sequence ? help Back to Top

Protein Sequence Length: 1411 aa Download sequence Send to blast

METGGLSGGD GGSSEGEKKK PQEGEAKVKR KMKTASQLEV LEKTYATEMY PSEATRAELS  60
VQLGLSDRQL QMWFCHRRLK DRKAAPLKRQ RKDSTSSAHL VGVAGEEMGG SEAGNEHGLG  120
GSSFLGHGLD LKRVVPRAGM TIPRYYEMPH SMAELELRAI KFAELQLGEP IRDDGPMFGM  180
EFDPLPPGAF GAPIAVQQKQ PGGPFETKIY DRRDTKTVKG SVRAVCEYQF LLEQPTVRTE  240
TYGRFPLSVN YGLPTDGPNA RALSLAAGSS SLLGNEQVQP GYGFPGQIPN LNLLPQQSRP  300
GHLLPTASGE YDYVSRTNTS TNTALDANIG SHPISALGSP FVSSDRRVCL DDDVLRKERK  360
RKGEEDRIAR EIEAHEKRIR RELEKQDMLK RKREEQIRKE MRRHEHEKRK EEERLLREKH  420
REEERYQREQ RRELERREKF LMKESIRAER LRQKEELRKE KEAARLRAAN ERAIARKLAK  480
ESMEPVEDEY LELMEIATSS QGLSLTLPLG FEALQNLDIF RDKLCEFPPK TVQLKRPFSI  540
QPWNGSEENV GNLLMVWRFL ITFADVLGLW PFTLDELVQA FHDYDPRLLG EIHVALLRSI  600
IKDIEDVART PSTGAGASQN SAANPGGGHP QIVEGAYAWG FDIRSWQRHL NVLTWPEILR  660
QFALSAGFGP QLKKRNIEQP YLCDGNEGND GEDIITNLRN GAAAENAIAI MQERGFSNPC  720
RSRHRLTPGT VKFAAFHILS LEGSKGLTVL EVAEKIQKSG LRDLTTNKAQ EASIAAAFSR  780
DTKLFDRTAP STYCVRSPYR KDPADAEAIL SAARERIQVF KSEFLSVDAE VAERDEDSES  840
DIAEDPVVDD LGAEINAKKE IHNSEERSSS VRETISGKEE SGVMETPQVE VGNACKGLSS  900
PHSGGFDKVK HIDASTEQSA GAASAGQEDM EIDESNPGEL WVQGLMEGDY SDLSVEERLN  960
ALVALISIVI EGNFIRIVLK ERLEAANALK KQIWTEAQLD KRRMKEDFVL RTYYSYVRNP  1020
VKNRLVMTSA ECRESPQIIG DKKDHDSSVY HVVQQECLNN SQNDQNCLNN MSTEGNLPVQ  1080
DFSFGPDNLQ YQQPGYALDR SRSLLKSYIG HKAEEMYAYR SLPLGQDRRR NRYWRFTTTS  1140
CNDPGCGRIF IELLDGRWRL IDTEEGFGAL LSSLDVRGIR ESLLHAMLLK IEMSFKEAVA  1200
RNKLHVNERQ KGDTAKQKAN EMASGLDWSV YSESPSSILC GSDSDMPETS SFSIELGRDE  1260
NEKNNALKRY QDFEKWMWKG CFSSLTFSVT KYGERMCKEL LGVCDSCFNV YFVKDNHCPS  1320
CHTTYIASKS ALIFSEHVAQ CAQKMQMGAE LALDGSVFSP MRIRLIKLQL ALLEVSIPFE  1380
ALQSTWTEDY RNSWGMKLDS STTAEELLQE *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438190.1	0.0	PREDICTED: uncharacterized protein LOC105764222 isoform X2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A0D2RFZ4	0.0	A0A0D2RFZ4_GOSRA; Uncharacterized protein
STRING	Gorai.008G155100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Gorai.008G155100.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]