PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G155100.3
Common NameB456_008G155100, LOC105764222
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 1415aa    MW: 159120 Da    PI: 5.9738
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G155100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61.1e-182983357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                        kR   t++qle+Le+ ++ ++yps+++r+eL+ +lgL++rq ++WF+ rR k++k
  Gorai.008G155100.3 29 KRKMKTASQLEVLEKTYATEMYPSEATRAELSVQLGLSDRQLQMWFCHRRLKDRK 83
                        89999************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-181283IPR009057Homeodomain-like
SuperFamilySSF466898.55E-162083IPR009057Homeodomain-like
PROSITE profilePS5007116.5522484IPR001356Homeobox domain
SMARTSM003891.8E-172688IPR001356Homeobox domain
CDDcd000864.98E-142783No hitNo description
PfamPF000462.8E-162983IPR001356Homeobox domain
PROSITE profilePS5082717.347551610IPR018501DDT domain
SMARTSM005713.9E-23551610IPR018501DDT domain
PfamPF027919.7E-18552607IPR018501DDT domain
PfamPF050665.0E-13733801IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.3E-8941980IPR028942WHIM1 domain
PfamPF156138.9E-1111241195IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1415 aa     Download sequence    Send to blast
METGGLSGGD GGSSEGEKKK PQEGEAKVKR KMKTASQLEV LEKTYATEMY PSEATRAELS  60
VQLGLSDRQL QMWFCHRRLK DRKAAPLKRQ RKDSTSSAHL VGVAGEEMGG SEAGNEHGLG  120
GSSFLGHGLD LKRVVPRAGM TIPRYYEMPH SMAELELRAI KFAELQLGEP IRDDGPMFGM  180
EFDPLPPGAF GAPIGASTAV QQKQPGGPFE TKIYDRRDTK TVKGSVRAVC EYQFLLEQPT  240
VRTETYGRFP LSVNYGLPTD GPNARALSLA AGSSSLLGNE QVQPGYGFPG QIPNLNLLPQ  300
QSRPGHLLPT ASGEYDYVSR TNTSTNTALD ANIGSHPISA LGSPFVSSDR RVCLDDDVLR  360
KERKRKGEED RIAREIEAHE KRIRRELEKQ DMLKRKREEQ IRKEMRRHEH EKRKEEERLL  420
REKHREEERY QREQRRELER REKFLMKESI RAERLRQKEE LRKEKEAARL RAANERAIAR  480
KLAKESMEPV EDEYLELMEI ATSSQGLSLT LPLGFEALQN LDIFRDKLCE FPPKTVQLKR  540
PFSIQPWNGS EENVGNLLMV WRFLITFADV LGLWPFTLDE LVQAFHDYDP RLLGEIHVAL  600
LRSIIKDIED VARTPSTGAG ASQNSAANPG GGHPQIVEGA YAWGFDIRSW QRHLNVLTWP  660
EILRQFALSA GFGPQLKKRN IEQPYLCDGN EGNDGEDIIT NLRNGAAAEN AIAIMQERGF  720
SNPCRSRHRL TPGTVKFAAF HILSLEGSKG LTVLEVAEKI QKSGLRDLTT NKAQEASIAA  780
AFSRDTKLFD RTAPSTYCVR SPYRKDPADA EAILSAARER IQVFKSEFLS VDAEVAERDE  840
DSESDIAEDP VVDDLGAEIN AKKEIHNSEE RSSSVRETIS GKEESGVMET PQVEVGNACK  900
GLSSPHSGGF DKVKHIDAST EQSAGAASAG QEDMEIDESN PGELWVQGLM EGDYSDLSVE  960
ERLNALVALI SIVIEGNFIR IVLKERLEAA NALKKQIWTE AQLDKRRMKE DFVLRTYYSY  1020
VRNPVKNRLV MTSAECRESP QIIGDKKDHD SSVYHVVQQE CLNNSQNDQN CLNNMSTEGN  1080
LPVQDFSFGP DNLQYQQPGY ALDRSRSLLK SYIGHKAEEM YAYRSLPLGQ DRRRNRYWRF  1140
TTTSCNDPGC GRIFIELLDG RWRLIDTEEG FGALLSSLDV RGIRESLLHA MLLKIEMSFK  1200
EAVARNKLHV NERQKGDTAK QKANEMASGL DWSVYSESPS SILCGSDSDM PETSSFSIEL  1260
GRDENEKNNA LKRYQDFEKW MWKGCFSSLT FSVTKYGERM CKELLGVCDS CFNVYFVKDN  1320
HCPSCHTTYI ASKSALIFSE HVAQCAQKMQ MGAELALDGS VFSPMRIRLI KLQLALLEVS  1380
IPFEALQSTW TEDYRNSWGM KLDSSTTAEE LLQE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438192.10.0PREDICTED: uncharacterized protein LOC105764222 isoform X4
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A0D2T6R60.0A0A0D2T6R6_GOSRA; Uncharacterized protein
STRINGGorai.008G155100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]