PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G155100.3 | ||||||||
Common Name | B456_008G155100, LOC105764222 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HB-other | ||||||||
Protein Properties | Length: 1415aa MW: 159120 Da PI: 5.9738 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.6 | 1.1e-18 | 29 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ ++yps+++r+eL+ +lgL++rq ++WF+ rR k++k Gorai.008G155100.3 29 KRKMKTASQLEVLEKTYATEMYPSEATRAELSVQLGLSDRQLQMWFCHRRLKDRK 83 89999************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-18 | 12 | 83 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.55E-16 | 20 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.552 | 24 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-17 | 26 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.98E-14 | 27 | 83 | No hit | No description |
Pfam | PF00046 | 2.8E-16 | 29 | 83 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 17.347 | 551 | 610 | IPR018501 | DDT domain |
SMART | SM00571 | 3.9E-23 | 551 | 610 | IPR018501 | DDT domain |
Pfam | PF02791 | 9.7E-18 | 552 | 607 | IPR018501 | DDT domain |
Pfam | PF05066 | 5.0E-13 | 733 | 801 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 1.3E-8 | 941 | 980 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 8.9E-11 | 1124 | 1195 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1415 aa Download sequence Send to blast |
METGGLSGGD GGSSEGEKKK PQEGEAKVKR KMKTASQLEV LEKTYATEMY PSEATRAELS 60 VQLGLSDRQL QMWFCHRRLK DRKAAPLKRQ RKDSTSSAHL VGVAGEEMGG SEAGNEHGLG 120 GSSFLGHGLD LKRVVPRAGM TIPRYYEMPH SMAELELRAI KFAELQLGEP IRDDGPMFGM 180 EFDPLPPGAF GAPIGASTAV QQKQPGGPFE TKIYDRRDTK TVKGSVRAVC EYQFLLEQPT 240 VRTETYGRFP LSVNYGLPTD GPNARALSLA AGSSSLLGNE QVQPGYGFPG QIPNLNLLPQ 300 QSRPGHLLPT ASGEYDYVSR TNTSTNTALD ANIGSHPISA LGSPFVSSDR RVCLDDDVLR 360 KERKRKGEED RIAREIEAHE KRIRRELEKQ DMLKRKREEQ IRKEMRRHEH EKRKEEERLL 420 REKHREEERY QREQRRELER REKFLMKESI RAERLRQKEE LRKEKEAARL RAANERAIAR 480 KLAKESMEPV EDEYLELMEI ATSSQGLSLT LPLGFEALQN LDIFRDKLCE FPPKTVQLKR 540 PFSIQPWNGS EENVGNLLMV WRFLITFADV LGLWPFTLDE LVQAFHDYDP RLLGEIHVAL 600 LRSIIKDIED VARTPSTGAG ASQNSAANPG GGHPQIVEGA YAWGFDIRSW QRHLNVLTWP 660 EILRQFALSA GFGPQLKKRN IEQPYLCDGN EGNDGEDIIT NLRNGAAAEN AIAIMQERGF 720 SNPCRSRHRL TPGTVKFAAF HILSLEGSKG LTVLEVAEKI QKSGLRDLTT NKAQEASIAA 780 AFSRDTKLFD RTAPSTYCVR SPYRKDPADA EAILSAARER IQVFKSEFLS VDAEVAERDE 840 DSESDIAEDP VVDDLGAEIN AKKEIHNSEE RSSSVRETIS GKEESGVMET PQVEVGNACK 900 GLSSPHSGGF DKVKHIDAST EQSAGAASAG QEDMEIDESN PGELWVQGLM EGDYSDLSVE 960 ERLNALVALI SIVIEGNFIR IVLKERLEAA NALKKQIWTE AQLDKRRMKE DFVLRTYYSY 1020 VRNPVKNRLV MTSAECRESP QIIGDKKDHD SSVYHVVQQE CLNNSQNDQN CLNNMSTEGN 1080 LPVQDFSFGP DNLQYQQPGY ALDRSRSLLK SYIGHKAEEM YAYRSLPLGQ DRRRNRYWRF 1140 TTTSCNDPGC GRIFIELLDG RWRLIDTEEG FGALLSSLDV RGIRESLLHA MLLKIEMSFK 1200 EAVARNKLHV NERQKGDTAK QKANEMASGL DWSVYSESPS SILCGSDSDM PETSSFSIEL 1260 GRDENEKNNA LKRYQDFEKW MWKGCFSSLT FSVTKYGERM CKELLGVCDS CFNVYFVKDN 1320 HCPSCHTTYI ASKSALIFSE HVAQCAQKMQ MGAELALDGS VFSPMRIRLI KLQLALLEVS 1380 IPFEALQSTW TEDYRNSWGM KLDSSTTAEE LLQE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012438192.1 | 0.0 | PREDICTED: uncharacterized protein LOC105764222 isoform X4 | ||||
Swissprot | Q9FFH1 | 0.0 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A0D2T6R6 | 0.0 | A0A0D2T6R6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G155100.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G155100.3 |
Entrez Gene | 105764222 |
Publications ? help Back to Top | |||
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