PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G153600.1 | ||||||||
Common Name | B456_008G153600, LOC105764206 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 420aa MW: 47139.5 Da PI: 5.8265 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 201 | 251 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++ + kl+ge Gorai.008G153600.1 201 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDREAFKLRGE 251 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.65E-35 | 200 | 260 | No hit | No description |
SuperFamily | SSF54171 | 5.49E-23 | 201 | 259 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.103 | 201 | 258 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.0E-41 | 201 | 264 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-32 | 201 | 259 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-11 | 202 | 213 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-13 | 202 | 251 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-11 | 224 | 240 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:2000070 | Biological Process | regulation of response to water deprivation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MAAANNIGKS KTGDGDEAIK MPRDQVLEIG KDKNVDFGLE RHEWRPVFYE ASMSKRPTKK 60 IRSPEREASF QFSASLPHQS SSCSVSSDAS FQPSRLVLPY AFDASQQPMY LSQQYGNNPT 120 LLPLPQHQQH MVSFTPQQQH DGVYQPMFSG ESSLPPQQLV QYWSNVLNLS PRGSLMMMSR 180 LGQNRRQLLR SPVQPINATK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDTAEEAALA 240 YDREAFKLRG ENARLNFPEL FVNKDKVTST APSSPVSSPQ TPHQSSKPNQ TQNLPQQEPE 300 EDQDLQSVEM ETVRPPEGDN PDSGSGMTTE GFGAEGVCGC EEMEWGAMAE AWFNAIPAGW 360 GPGSPVWDDL DTTNNLLFPS NLPFTHQNQN LLDSDLSKQH NSASSPSCPM KHFFWKDED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-20 | 200 | 258 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00458 | DAP | Transfer from AT4G28140 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU532310 | 6e-73 | EU532310.1 Gossypium barbadense clone I11-12 ISSR marker genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012438166.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF054-like | ||||
TrEMBL | A0A0D2T124 | 0.0 | A0A0D2T124_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G153600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2141 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 1e-50 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G153600.1 |
Entrez Gene | 105764206 |
Publications ? help Back to Top | |||
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