PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G147400.1
Common NameB456_008G147400, LOC105764138
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 290aa    MW: 31245.5 Da    PI: 6.5888
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G147400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.87.8e-111154344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         W+ e d+ + +a + ++ +   +W++Ia+ ++ g+tl+++k ++
  Gorai.008G147400.1 11 EWSREQDKAFENALATYPEDtsdRWEKIAADVP-GKTLEEIKQHY 54
                        7********************************.**********9 PP
2Myb_DNA-binding43.95.7e-14122166347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Gorai.008G147400.1 122 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                         6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.604762IPR017884SANT domain
SMARTSM007171.8E-10860IPR001005SANT/Myb domain
SuperFamilySSF466896.7E-121066IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-51155IPR009057Homeodomain-like
PfamPF002492.9E-81154IPR001005SANT/Myb domain
CDDcd001671.57E-91157No hitNo description
PROSITE profilePS5129417.61114171IPR017930Myb domain
SuperFamilySSF466898.28E-17117172IPR009057Homeodomain-like
SMARTSM007174.5E-11119169IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.4E-17119169IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.0E-11122165IPR009057Homeodomain-like
PfamPF002497.1E-12122166IPR001005SANT/Myb domain
CDDcd001671.19E-10122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MTVDEASNSS EWSREQDKAF ENALATYPED TSDRWEKIAA DVPGKTLEEI KQHYELLEDD  60
VNRIESGCVP LPAYSSSEGS TCHAGDEVTS KKGSDHLGHF NSESDHGSKN SRSDQERRKG  120
IAWTEDEHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSINKDRRRS  180
SIHDITSVGN GEILATQGPI TGEPNGAATG GSSAKSAKQP SQLPAAPPGV GMYSSPTIGQ  240
PIGGPLVSTV GTPVNLPAPP HLAYGAVVPS APMNMGPVKY SMPHKSDHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1812801179RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438079.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012438080.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012438081.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012438082.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012438083.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-125SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0D2PV850.0A0A0D2PV85_GOSRA; Uncharacterized protein
STRINGGorai.008G147400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-123MYB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]