PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G142200.1

Common Name

B456_008G142200, LOC105764089

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 121aa MW: 13608.9 Da PI: 10.4129

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G142200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	59.5	4.3e-19	16	49	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+ttkTplWR gp g+k+LCnaCG++ rkk+ Gorai.008G142200.1 16 CVDCKTTKTPLWRGGPAGPKSLCNACGIRLRKKK 49 ********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	1.7E-15	10	61	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	13.217	10	46	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.7E-14	10	55	No hit	No description
Gene3D	G3DSA:3.30.50.10	2.3E-16	14	50	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	6.15E-13	15	50	No hit	No description
PROSITE pattern	PS00344	0	16	41	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	6.7E-17	16	50	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MHILHQRQLK EENKRCVDCK TTKTPLWRGG PAGPKSLCNA CGIRLRKKKR AALLGWNSDS 60 GNITEKYKTK TGIDDVGPSG IKIQGRDMKV HQIVEDQKWK MKLREEEQAA FLLMALSTGY 120 *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438003.1	2e-85	PREDICTED: GATA transcription factor 15-like
TrEMBL	A0A0D2U2Z1	4e-84	A0A0D2U2Z1_GOSRA; Uncharacterized protein
STRING	Gorai.008G142200.1	7e-85	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17347	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06740.1	3e-26	GATA transcription factor 15

Link Out ? help Back to Top
Phytozome	Gorai.008G142200.1
Entrez Gene	105764089

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]