PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G141000.1
Common NameB456_008G141000, LOC105762462
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 241aa    MW: 27312.7 Da    PI: 6.1505
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G141000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +grWT eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  Gorai.008G141000.1 14 KGRWTDEEDEILTKYIQVNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP
2Myb_DNA-binding55.61.2e-1767111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T+ Ede +v+++  lG++ W++Ia++++ gRt++++k++w+ +
  Gorai.008G141000.1  67 RGNFTAKEDETIVNLHSTLGNR-WSLIASHLP-GRTDNEIKNYWNAH 111
                         89********************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.359961IPR017930Myb domain
SuperFamilySSF466894.77E-2911108IPR009057Homeodomain-like
SMARTSM007174.3E-121363IPR001005SANT/Myb domain
PfamPF002494.4E-141461IPR001005SANT/Myb domain
CDDcd001676.83E-91661No hitNo description
PROSITE profilePS5129424.88862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-2665116IPR009057Homeodomain-like
SMARTSM007171.6E-1666114IPR001005SANT/Myb domain
PfamPF002491.3E-1567112IPR001005SANT/Myb domain
CDDcd001673.16E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTDE EDEILTKYIQ VNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRTDLKRGNF TAKEDETIVN LHSTLGNRWS LIASHLPGRT DNEIKNYWNA HLSRKIYRWA  120
MKKNKSCCFN AQKDAISSSN KPMEVVPVIP SHSESEEERN MENISRPNSS SCNTEKETGS  180
EDIWEPCSKD IMGSELLPPN DDLSLSGYGE NSIEDDLNPI TSCFVDDDLF GILRKFSSRE  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-24121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435708.11e-178PREDICTED: transcription factor MYB12-like
RefseqXP_012435709.11e-178PREDICTED: transcription factor MYB12-like
TrEMBLA0A0D2RF121e-176A0A0D2RF12_GOSRA; Uncharacterized protein
STRINGGorai.008G141000.11e-177(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.15e-73myb domain protein 111
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]