PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G138900.2 | ||||||||
Common Name | B456_008G138900, LOC105764057 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 239aa MW: 26768.7 Da PI: 6.2518 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.4 | 8.3e-30 | 45 | 102 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YY+C+++ gC++kk+ver+++d ++++itY+++Hnh+ Gorai.008G138900.2 45 DSWSWRKYGQKPIKGSPYPRGYYKCSTSkGCSAKKQVERCKTDASMLIITYTSSHNHP 102 99***********************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-31 | 38 | 104 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.27E-25 | 41 | 104 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-35 | 43 | 103 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.031 | 45 | 104 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-25 | 45 | 102 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDGSISPKQN QSQASKRRKV VERTVVTVKM GENGGKLKND GPPYDSWSWR KYGQKPIKGS 60 PYPRGYYKCS TSKGCSAKKQ VERCKTDASM LIITYTSSHN HPSPHLHNTK TLSQSPTKEP 120 QSDDDDGDND DRAPTTKQEH LPDKDEDQFH YLQSPLSFPQ NQEEDPFSGN LERSTVGLLL 180 DEEPVSCCSR MKAASSSPTP KSEENDFFDE LEELPICSAF TRFMRSKFFD EGIPVVPP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-21 | 45 | 104 | 18 | 79 | Disease resistance protein RRS1 |
5w3x_D | 4e-21 | 45 | 104 | 18 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM438476 | 0.0 | KM438476.1 Gossypium aridum WRKY105 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437961.1 | 1e-178 | PREDICTED: probable WRKY transcription factor 65 isoform X2 | ||||
Refseq | XP_012437962.1 | 1e-178 | PREDICTED: probable WRKY transcription factor 65 isoform X2 | ||||
Refseq | XP_012437963.1 | 1e-178 | PREDICTED: probable WRKY transcription factor 65 isoform X2 | ||||
Refseq | XP_012437964.1 | 1e-178 | PREDICTED: probable WRKY transcription factor 65 isoform X2 | ||||
TrEMBL | A0A0D2T080 | 1e-177 | A0A0D2T080_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G138900.1 | 1e-178 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 4e-27 | WRKY DNA-binding protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G138900.2 |
Entrez Gene | 105764057 |
Publications ? help Back to Top | |||
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