PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.008G137300.1 | ||||||||
Common Name | B456_008G137300, LOC105764037 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 247aa MW: 28741.9 Da PI: 4.7983 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.6 | 3.4e-19 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd l+ +v+++G g+W+++ar g++Rt+k+c++rw++yl Gorai.008G137300.1 26 KGQWTEEEDSMLKAYVTLHGEGRWNSVARFSGLRRTGKSCRLRWLNYL 73 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5e-16 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ +G++ W++Ia++++ gRt++++k++w++ Gorai.008G137300.1 79 RGSITLEEQLLIIQLHSIWGNR-WSKIAEHLP-GRTDNEIKNYWRT 122 7889******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.756 | 21 | 77 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.73E-31 | 23 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-15 | 25 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-16 | 26 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-22 | 27 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.31E-11 | 29 | 73 | No hit | No description |
SMART | SM00717 | 5.2E-15 | 78 | 126 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.864 | 78 | 128 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.0E-14 | 79 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-22 | 81 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.94E-10 | 83 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MEVYERGFFS ISESGRQIEE VMDVRKGQWT EEEDSMLKAY VTLHGEGRWN SVARFSGLRR 60 TGKSCRLRWL NYLRPAVRRG SITLEEQLLI IQLHSIWGNR WSKIAEHLPG RTDNEIKNYW 120 RTKVQKQAKK LECDVNSPKF RDALRYEYTP RLIEQISRAK HESPSGQLTY GNETESVQVD 180 QSLLPESSSE TQVTYGSTVA ETWGIDEQSN GNGWLGGGDY WMESEWCEEN IWFLQQQLYD 240 DEDDVI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 21 | 128 | 2 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX609428 | 4e-91 | JX609428.1 Gossypium hirsutum clone NBRI_GE50656 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437940.1 | 0.0 | PREDICTED: transcription factor MYB108-like isoform X1 | ||||
Swissprot | Q10MB4 | 2e-69 | MYB2_ORYSJ; Transcription factor MYB2 | ||||
TrEMBL | A0A0D2U2Q3 | 0.0 | A0A0D2U2Q3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G137300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47190.1 | 9e-69 | myb domain protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.008G137300.1 |
Entrez Gene | 105764037 |