PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G135700.2 | ||||||||
Common Name | B456_008G135700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SBP | ||||||||
Protein Properties | Length: 889aa MW: 98902.9 Da PI: 6.3105 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.2 | 1.8e-41 | 155 | 232 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Gorai.008G135700.2 155 VCQVEDCGADLSHAKDYHRRHKVCEMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 232 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.7E-34 | 149 | 217 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.214 | 153 | 230 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.1E-38 | 154 | 236 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-29 | 156 | 229 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 889 aa Download sequence Send to blast |
MEVRVGNEAR PFYGMMNPVG LPAVGKRTLE WDLNDWKWDG DLFIASSINP VSADSMGRQF 60 FPIGSGIPGN SSNSSSSCSE EVNPETEKGK RELEKKRRVI VVEDDLPNQE AGSLSLKLGS 120 QGGHGYPVSQ RGMRNWEGTN GKKTKLSGGS GNRAVCQVED CGADLSHAKD YHRRHKVCEM 180 HSKASKALVG NVMQRFCQQC SRFHVLQEFD EGKRSCRRRL AGHNKRRRKT NPDAIVNSNS 240 LNDEQTSGYL LLSLLRILSN MHSNRSDQTT DQDLLTHLLR SLASRTGEQG GKNMSGLLPE 300 ACDLEAVSAL FSNGQGPPRP FKHHITGTAS QIPHTGRQSC DTKGAEVPSN TAGAVKINNF 360 DLNDIYIDSD DETDGIERSL APVNAGTGSL DCPSWVQQDS HQSSPPQTSR NSDSASAQSP 420 SSSSGDVQSR TDRIVFKLFG KEPNDFPLVL RAQILDWLSH SPTDIESYIR PGCIVLTIYL 480 RQAEAAWDEL RYDLSFSLSR LLHCSDDTFW RTGWICIRVL DQIAFIYNGQ VVVDTSLPLG 540 SNHYSKIMSV KPIAISATER AQFSVKGINL SQPATRLLCA VEGKYLVQEA THELMDDSDD 600 LKEQDELECI NFSCSIPNVI GRGFIEIEDH CLNSSFFPFL VAEDDVCLEI RMLESVLETT 660 DTDADIGRCG KMEAKNQAMD FIHEVGWLLH RSQLKSRLGH LDPNPELFPL RRFKWLMEFS 720 MDHEWCAVVK KLLNILLDGI VSSGEHPSLN LALTEMGLLH RAVRKNCRPL VELLLRFVPE 780 KTSDRLGFEN ETVADGVHKS YLFRPDVIGP AGLTPLHIAA GKDGSEDLLD ALTDDPGKVI 840 RFVFKHMLGT ELQNCCCNYH ILKCILFYLV QSRLCLPNVF PNLYLGWH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-31 | 147 | 229 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during plant development. {ECO:0000269|PubMed:10524240}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437915.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 1 | ||||
Swissprot | Q9S7P5 | 0.0 | SPL12_ARATH; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A0D2T013 | 0.0 | A0A0D2T013_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G135700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 0.0 | squamosa promoter-binding protein-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G135700.2 |
Publications ? help Back to Top | |||
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