PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G135700.1

Common Name

B456_008G135700, LOC105764019

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 988aa MW: 109565 Da PI: 6.4791

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G135700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132	2e-41	155	232	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Gorai.008G135700.1 155 VCQVEDCGADLSHAKDYHRRHKVCEMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 232 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.7E-34	149	217	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.214	153	230	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.27E-38	154	236	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-29	156	229	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	3.0E-5	728	871	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.2E-6	758	870	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.63E-6	759	870	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 988 aa Download sequence Send to blast
MEVRVGNEAR PFYGMMNPVG LPAVGKRTLE WDLNDWKWDG DLFIASSINP VSADSMGRQF 60 FPIGSGIPGN SSNSSSSCSE EVNPETEKGK RELEKKRRVI VVEDDLPNQE AGSLSLKLGS 120 QGGHGYPVSQ RGMRNWEGTN GKKTKLSGGS GNRAVCQVED CGADLSHAKD YHRRHKVCEM 180 HSKASKALVG NVMQRFCQQC SRFHVLQEFD EGKRSCRRRL AGHNKRRRKT NPDAIVNSNS 240 LNDEQTSGYL LLSLLRILSN MHSNRSDQTT DQDLLTHLLR SLASRTGEQG GKNMSGLLPE 300 ACDLEAVSAL FSNGQGPPRP FKHHITGTAS QIPHTGRQSC DTKGAEVPSN TAGAVKINNF 360 DLNDIYIDSD DETDGIERSL APVNAGTGSL DCPSWVQQDS HQSSPPQTSR NSDSASAQSP 420 SSSSGDVQSR TDRIVFKLFG KEPNDFPLVL RAQILDWLSH SPTDIESYIR PGCIVLTIYL 480 RQAEAAWDEL RYDLSFSLSR LLHCSDDTFW RTGWICIRVL DQIAFIYNGQ VVVDTSLPLG 540 SNHYSKIMSV KPIAISATER AQFSVKGINL SQPATRLLCA VEGKYLVQEA THELMDDSDD 600 LKEQDELECI NFSCSIPNVI GRGFIEIEDH CLNSSFFPFL VAEDDVCLEI RMLESVLETT 660 DTDADIGRCG KMEAKNQAMD FIHEVGWLLH RSQLKSRLGH LDPNPELFPL RRFKWLMEFS 720 MDHEWCAVVK KLLNILLDGI VSSGEHPSLN LALTEMGLLH RAVRKNCRPL VELLLRFVPE 780 KTSDRLGFEN ETVADGVHKS YLFRPDVIGP AGLTPLHIAA GKDGSEDLLD ALTDDPGKVG 840 IDAWKNARDS TGSTPEDYAR LRGHYSYIHL VQKKINKRPP SGHVVVDIPS AVSDCSTNQK 900 PNNESTSSFE IGQLELRSIK RNCKLCDQKL AYGYGTANRS LVYRPAMLSM VAVAAVCVCV 960 ALLFKSCPEV LYIFRPFRWE LLDYGTS*

Sequence ? help Back to Top

Protein Sequence Length: 988 aa Download sequence Send to blast

MEVRVGNEAR PFYGMMNPVG LPAVGKRTLE WDLNDWKWDG DLFIASSINP VSADSMGRQF  60
FPIGSGIPGN SSNSSSSCSE EVNPETEKGK RELEKKRRVI VVEDDLPNQE AGSLSLKLGS  120
QGGHGYPVSQ RGMRNWEGTN GKKTKLSGGS GNRAVCQVED CGADLSHAKD YHRRHKVCEM  180
HSKASKALVG NVMQRFCQQC SRFHVLQEFD EGKRSCRRRL AGHNKRRRKT NPDAIVNSNS  240
LNDEQTSGYL LLSLLRILSN MHSNRSDQTT DQDLLTHLLR SLASRTGEQG GKNMSGLLPE  300
ACDLEAVSAL FSNGQGPPRP FKHHITGTAS QIPHTGRQSC DTKGAEVPSN TAGAVKINNF  360
DLNDIYIDSD DETDGIERSL APVNAGTGSL DCPSWVQQDS HQSSPPQTSR NSDSASAQSP  420
SSSSGDVQSR TDRIVFKLFG KEPNDFPLVL RAQILDWLSH SPTDIESYIR PGCIVLTIYL  480
RQAEAAWDEL RYDLSFSLSR LLHCSDDTFW RTGWICIRVL DQIAFIYNGQ VVVDTSLPLG  540
SNHYSKIMSV KPIAISATER AQFSVKGINL SQPATRLLCA VEGKYLVQEA THELMDDSDD  600
LKEQDELECI NFSCSIPNVI GRGFIEIEDH CLNSSFFPFL VAEDDVCLEI RMLESVLETT  660
DTDADIGRCG KMEAKNQAMD FIHEVGWLLH RSQLKSRLGH LDPNPELFPL RRFKWLMEFS  720
MDHEWCAVVK KLLNILLDGI VSSGEHPSLN LALTEMGLLH RAVRKNCRPL VELLLRFVPE  780
KTSDRLGFEN ETVADGVHKS YLFRPDVIGP AGLTPLHIAA GKDGSEDLLD ALTDDPGKVG  840
IDAWKNARDS TGSTPEDYAR LRGHYSYIHL VQKKINKRPP SGHVVVDIPS AVSDCSTNQK  900
PNNESTSSFE IGQLELRSIK RNCKLCDQKL AYGYGTANRS LVYRPAMLSM VAVAAVCVCV  960
ALLFKSCPEV LYIFRPFRWE LLDYGTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-31	147	229	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269\|PubMed:10524240}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437915.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A0D2RER5	0.0	A0A0D2RER5_GOSRA; Uncharacterized protein
STRING	Gorai.008G135700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3030	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Link Out ? help Back to Top
Phytozome	Gorai.008G135700.1
Entrez Gene	105764019

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]