PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G134300.2
Common NameB456_008G134300, LOC105764002
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 420aa    MW: 45465.6 Da    PI: 8.22
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G134300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30189246359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Gorai.008G134300.2 189 DGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKSILITTYEGNHNHH 246
                         9********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-33172248IPR003657WRKY domain
SuperFamilySSF1182902.75E-27181248IPR003657WRKY domain
PROSITE profilePS5081128.736182248IPR003657WRKY domain
SMARTSM007741.6E-36187247IPR003657WRKY domain
PfamPF031062.4E-26189246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSVLKIELER LQEENRRLKS MLDHITRNYN ELQGQLFMAV QKQALLAINK QQVNKEGVKG  60
MSSHPIMSIQ QSMDPRRPLT TLDVNEPSAT DDKRTELSAS SPANATTSTM DVVSKDGNDD  120
HHRTVQIQGK HVFVEDVIDQ TCQQSWGTSP KSSPMVDEPK KEEEQVPEVA LKKARVSVRA  180
RSEAPMIIDG CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP VRKQVQRCAE DKSILITTYE  240
GNHNHHLPPA ATAMAKTTCA AAAMVLSGST TSNDGLPNSG YFHSSLPYAT MATLSASPPF  300
PTITLDLTQG PNPVPFIRPP PSPPTFPLPL HGYPKLSALP AMQIGQQQQQ HTASMVETVT  360
AAIASDPNFT AVLAAAISTF MGSPPPPLPP SNNGNNSTTS QALPGSPQLP QSCTTFSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-21174250176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698280.0KF669828.1 Gossypium hirsutum WRKY transcription factor 79 (WRKY79) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437882.10.0PREDICTED: probable WRKY transcription factor 47 isoform X1
TrEMBLA0A0D2SZY80.0A0A0D2SZY8_GOSRA; Uncharacterized protein
STRINGGorai.008G134300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.14e-67WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]