PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G133700.1
Common NameB456_008G133700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 336aa    MW: 38409.5 Da    PI: 8.3211
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G133700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.9e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l++ ++++G g+W++I++  g+ R++k+c++rw +yl
  Gorai.008G133700.1 14 KGLWSPEEDEKLLRHITKYGHGCWSSIPKQAGLQRCGKSCRLRWINYL 61
                        678*******************************************97 PP
2Myb_DNA-binding40.46.8e-1367145146
                         TSSS-HHHHHHHHHHHHHTTTT..................................-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..................................tWktIartmgkgRtlkqcksrwqk 46 
                         rg +++eE+ l++++++ lG++                                  +W+ Ia++++ gRt++++k+ w++
  Gorai.008G133700.1  67 RGTFSQEEENLIIELHAVLGNRyihihihshiyicffffflleflwrilgfsrfsiRWSQIAARLP-GRTDNEIKNLWNS 145
                         899***************************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-28564IPR009057Homeodomain-like
PROSITE profilePS5129425.599965IPR017930Myb domain
SMARTSM007178.2E-141363IPR001005SANT/Myb domain
PfamPF002491.0E-151461IPR001005SANT/Myb domain
SuperFamilySSF466893.35E-231692IPR009057Homeodomain-like
CDDcd001678.16E-121761No hitNo description
PROSITE profilePS500908.87362147IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.5E-226587IPR009057Homeodomain-like
SMARTSM007171.6E-766149IPR001005SANT/Myb domain
PfamPF002491.5E-1067146IPR001005SANT/Myb domain
CDDcd001671.48E-469144No hitNo description
SuperFamilySSF466893.18E-8116156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-22123152IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGRQSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSI PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEENLIIE LHAVLGNRYI HIHIHSHIYI CFFFFFLLEF LWRILGFSRF  120
SIRWSQIAAR LPGRTDNEIK NLWNSCLKKK LKQKGIDPVT HKPLSEVENG EGNGSNKPSL  180
VGHHPIHQYT SPPPPPPKLS SNWFNPEFSP PMTASYGPLY YGTTTGGSAN NTTWGLVQTQ  240
TEEEEEETKW TELLNSPLLM AAALQNQTPQ SYYNIEIKSE TCYLTNSSSS SSSSNDMWWP  300
QTQQQQLPLQ HEPLQNPDIC GKDMQTLTAA AFGHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-221215125128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146152LKKKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed specifically in guard cells (PubMed:16005292). Expressed in sink tissues, such as xylem, roots and developing seeds (PubMed:22708996). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:22708996}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9083440.0DQ908344.1 Gossypium hirsutum clone LIB5327-004-A1-N1-E10_Gh405 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708671.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ8VZQ25e-76MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A0D2T5G90.0A0A0D2T5G9_GOSRA; Uncharacterized protein
STRINGGorai.008G133700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.32e-82myb domain protein 55
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]