PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G132400.1
Common NameB456_008G132400, LOC105763985
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 371aa    MW: 42614.4 Da    PI: 6.5667
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G132400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.96.5e-31118206185
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+kv tpsdv+k++rlv+pk++ae++    +++ e++  l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F++ 
  Gorai.008G132400.1 118 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSIEKGLLLNFEDRNGKTWRFRYSYWNSSQSYVMTKGWSRFVKEKKLVAGDTVSFQRG 206
                         89***************************955556888*************************************************43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-40112209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-29115205IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-26116205No hitNo description
PROSITE profilePS5086314.057118218IPR003340B3 DNA binding domain
SMARTSM010191.0E-22118217IPR003340B3 DNA binding domain
PfamPF023623.1E-28118217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MMNFVEEEEE KGYYCNNEDQ EEDDEEVVMI REISSNNFPF SSSSSSSVSS KYKDAAAAAV  60
HLSLGTFDSK QDHNKTQQQS GFDFDKKQDL VMDLSLGNHK NNDHEESCYE SVEKEHMFDK  120
VVTPSDVGKL NRLVIPKQHA EKYFPLDSSS IEKGLLLNFE DRNGKTWRFR YSYWNSSQSY  180
VMTKGWSRFV KEKKLVAGDT VSFQRGVGEL VKARLYIDWK LRPNALDPSP FAHIQLRNQF  240
NFLQPVRWEP ICMSRNYQPL HRLNYSIDPY NHRHHHHFQH QHQQQAITYS SMSQYYQIGA  300
LQGEPMVIDS VPVIEANNNK ASAKRLRLFG VNMDCPNPTQ DESSSSIPLS NTQAEYSNKG  360
KSSLSIVLGL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-601122252116B3 domain-containing transcription factor NGA1
5os9_B4e-601122252116B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6166620.0JX616662.1 Gossypium hirsutum clone NBRI_GE61480 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437859.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotQ8LMR92e-73Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0D2PU430.0A0A0D2PU43_GOSRA; Uncharacterized protein
STRINGGorai.008G132400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2484534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-71B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]