PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G128800.1

Common Name

B456_008G128800, LOC105763947

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 488aa MW: 54545.1 Da PI: 5.8037

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G128800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8.2e-12	306	351	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr +P+ +++Ka+ L Av YI +L Gorai.008G128800.1 306 NHVEAERQRREKLNHRFYALRAAVPNV-----SRMDKASLLSDAVTYITEL 351 799*********************6.....4*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.0E-53	26	214	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	6.33E-13	300	356	No hit	No description
PROSITE profile	PS50888	16.259	302	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.18E-16	302	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-9	306	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-16	306	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-14	308	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MEELIISPSS SSSLVSFSQE TPPSTLQQRL QFIVQSHQEW CTYAIFWQTS NDDHGRLFLA 60 WEDGHFQGTK DTSPKSTPNN NNNNDMYSFQ GLHNERRNVL KRLQALIGDN HDISGSLVDG 120 TDITDAEWFY VMSLTRSFSL GDGVLGKVLS TGSLVWLTGA HELQFNGCER AREAQLHGIR 180 TLVCIPTNRG VLELGSSDMI KENCEFVQQV KSLFGFDPNL TSGSTQFLER TISFPDIGLL 240 AGIEEENGGP DNKTIRDLKP GQQSSYVDSE NSDFDCPLLA VNNTENIRTP KKRGRKPCLR 300 RDTPVNHVEA ERQRREKLNH RFYALRAAVP NVSRMDKASL LSDAVTYITE LKSKIKDLES 360 QLRKVCNEKV KVETIDAMDN QSTTTSEEQA AARPSNSSSA ATGRFSDLQL DVKVKGNDDA 420 IIRVQSENVN YPSARLMSAL RDLEFQVHHA SMSCVNELML QDIVAKIPYG LTSEEAIKSA 480 LLWRLHQ*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MEELIISPSS SSSLVSFSQE TPPSTLQQRL QFIVQSHQEW CTYAIFWQTS NDDHGRLFLA  60
WEDGHFQGTK DTSPKSTPNN NNNNDMYSFQ GLHNERRNVL KRLQALIGDN HDISGSLVDG  120
TDITDAEWFY VMSLTRSFSL GDGVLGKVLS TGSLVWLTGA HELQFNGCER AREAQLHGIR  180
TLVCIPTNRG VLELGSSDMI KENCEFVQQV KSLFGFDPNL TSGSTQFLER TISFPDIGLL  240
AGIEEENGGP DNKTIRDLKP GQQSSYVDSE NSDFDCPLLA VNNTENIRTP KKRGRKPCLR  300
RDTPVNHVEA ERQRREKLNH RFYALRAAVP NVSRMDKASL LSDAVTYITE LKSKIKDLES  360
QLRKVCNEKV KVETIDAMDN QSTTTSEEQA AARPSNSSSA ATGRFSDLQL DVKVKGNDDA  420
IIRVQSENVN YPSARLMSAL RDLEFQVHHA SMSCVNELML QDIVAKIPYG LTSEEAIKSA  480
LLWRLHQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	4e-35	25	217	8	195	Transcription factor MYC3
4rqw_B	4e-35	25	217	8	195	Transcription factor MYC3
4rs9_A	4e-35	25	217	8	195	Transcription factor MYC3
4yz6_A	4e-35	25	217	8	195	Transcription factor MYC3
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX591258	1e-83	JX591258.1 Gossypium hirsutum clone NBRI_GE26339 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437808.1	0.0	PREDICTED: transcription factor MYC2-like
TrEMBL	A0A0D2U279	0.0	A0A0D2U279_GOSRA; Uncharacterized protein
STRING	Gorai.008G128800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3039	21	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	4e-86	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G128800.1
Entrez Gene	105763947

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]