PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G126800.1
Common NameB456_008G126800, LOC105763920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 273aa    MW: 29920.9 Da    PI: 8.7324
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G126800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.51.6e-3943103262
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         + ++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss
  Gorai.008G126800.1  43 PPEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 103
                         57899*****************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2642101IPR003851Zinc finger, Dof-type
PfamPF027012.3E-3346101IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.19947101IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104985IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDSDKWSQGF QVKSMEEMMV ANNNTCTKGT TTTTTVLEKK TRPPEQLNCP RCNSTNTKFC  60
YYNNYSLTQP RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK RSSISASSSS SSSSSSSSTA  120
FASDSAKVLD LNPSTFSLLS SSQNPNKVHY KGQDLNLTFP PMQEPGLYDH QHNYYYYYNN  180
TGMVSRGLNS FVPAPAAPAT PAPATLFSMQ DYKPTLSSTT FPIHSGVQGF PFGEMKQVSS  240
TNNEVDDDQN KEQSNSTGFW NNNGVLGGGG SW*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
UniprotTISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3935603e-92GQ393560.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0525 SSR marker CGR5558 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437781.10.0PREDICTED: dof zinc finger protein DOF3.7
SwissprotQ433855e-59DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A0D2RED90.0A0A0D2RED9_GOSRA; Uncharacterized protein
STRINGGorai.008G126800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2838533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.12e-51Dof family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]