PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G126800.1 | ||||||||
Common Name | B456_008G126800, LOC105763920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 273aa MW: 29920.9 Da PI: 8.7324 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.5 | 1.6e-39 | 43 | 103 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + ++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss Gorai.008G126800.1 43 PPEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 103 57899*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-26 | 42 | 101 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-33 | 46 | 101 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.199 | 47 | 101 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 49 | 85 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MDSDKWSQGF QVKSMEEMMV ANNNTCTKGT TTTTTVLEKK TRPPEQLNCP RCNSTNTKFC 60 YYNNYSLTQP RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK RSSISASSSS SSSSSSSSTA 120 FASDSAKVLD LNPSTFSLLS SSQNPNKVHY KGQDLNLTFP PMQEPGLYDH QHNYYYYYNN 180 TGMVSRGLNS FVPAPAAPAT PAPATLFSMQ DYKPTLSSTT FPIHSGVQGF PFGEMKQVSS 240 TNNEVDDDQN KEQSNSTGFW NNNGVLGGGG SW* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ393560 | 3e-92 | GQ393560.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0525 SSR marker CGR5558 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437781.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.7 | ||||
Swissprot | Q43385 | 5e-59 | DOF37_ARATH; Dof zinc finger protein DOF3.7 | ||||
TrEMBL | A0A0D2RED9 | 0.0 | A0A0D2RED9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G126800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM28385 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.1 | 2e-51 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G126800.1 |
Entrez Gene | 105763920 |
Publications ? help Back to Top | |||
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