PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G126700.1
Common NameB456_008G126700, LOC105763918
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 272aa    MW: 30965.9 Da    PI: 8.2937
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G126700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.4e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+ Ed llv++++ +G g+W++ +++ g+ R++k+c++rw +yl
  Gorai.008G126700.1 14 RGPWTPREDTLLVKYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61
                        89******************************99************97 PP
2Myb_DNA-binding537.9e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ T++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Gorai.008G126700.1  67 RGNITPDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                         7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.565961IPR017930Myb domain
SuperFamilySSF466893.63E-3011108IPR009057Homeodomain-like
SMARTSM007175.0E-131363IPR001005SANT/Myb domain
PfamPF002494.7E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-231568IPR009057Homeodomain-like
CDDcd001671.83E-101661No hitNo description
PROSITE profilePS5129426.30262116IPR017930Myb domain
SMARTSM007173.7E-1666114IPR001005SANT/Myb domain
PfamPF002492.3E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2669116IPR009057Homeodomain-like
CDDcd001674.59E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWTPR EDTLLVKYIQ AHGEGHWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEEDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRLLSQG  120
TDPNTHKKLP PDNPVVVLVP KKKRKNKSTK PTEQEKPKIH LPKPSRFTSS VCTTKSSSQG  180
GENGQVLVPW SEYINDDENR TGFLCYNDNH DLINSSDFEC QSHHDHDHDQ VLGAEGDSND  240
SLEKIYEEYL QLLKTNEDQV QLDSFAESLL I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139146PKKKRKNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437779.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A0D2PTV90.0A0A0D2PTV9_GOSRA; Uncharacterized protein
STRINGGorai.008G126700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-70myb domain protein 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]