PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G126200.8 | ||||||||
Common Name | B456_008G126200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 589aa MW: 65836.1 Da PI: 7.8169 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.8e-24 | 123 | 223 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++ +k+a+e+ +++ + +++lt +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + Gorai.008G126200.8 123 FCKILTASDTSTHGGFSVLRKHATEClppldMNQATPTQELTAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--R 211 99****************************9555556679************************************************..3 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++el+v+v+r Gorai.008G126200.8 212 GDNGELRVGVRR 223 489999****98 PP | |||||||
2 | Auxin_resp | 103.7 | 2.2e-34 | 249 | 328 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha+ t++ F v+Y+Pr+ s+F++ v+k+++a++++ svGmRfkm+fe+eds+err++Gt+vgv d++p +W++SkWrsLk Gorai.008G126200.8 249 AAHAVMTQTLFVVYYKPRT--SQFIIGVSKYLEAINNRSSVGMRFKMRFEGEDSPERRFTGTIVGVGDASP-HWSESKWRSLK 328 79****************6..9**********************************************999.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.28E-39 | 113 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-40 | 116 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.39E-21 | 121 | 223 | No hit | No description |
PROSITE profile | PS50863 | 12.111 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.4E-22 | 123 | 223 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-22 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.9E-32 | 249 | 328 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
MAQPEGIPRE TGLGVDDLYP ELWKLCAGPL VEIPHVQERV FYFPQGHIEQ LEASTNQELN 60 YEAPLFNLSS KILCRVLHVQ LLAEQETDEV YAQITLQPEP DQSELTSPDP FPTEVPEREV 120 HSFCKILTAS DTSTHGGFSV LRKHATECLP PLDMNQATPT QELTAKDLHG YEWRFKHIFR 180 GQPRRHLLTT GWSTFVTSKR LVAGDAFVFL RGDNGELRVG VRRLGNQQST MPSSVISSQN 240 MHLGVLATAA HAVMTQTLFV VYYKPRTSQF IIGVSKYLEA INNRSSVGMR FKMRFEGEDS 300 PERRFTGTIV GVGDASPHWS ESKWRSLKIQ WDEPAMIQRP ERVSPWEIEP FSASASINLI 360 QPAVKSKRPR PVYILASDTT TNSTGSAFWC HGSTKSHELA RAGSIAEVQS SESSQVVWPM 420 RQNEADAGYN TRARLENAWP PSSLVNVSLN FFRNPADASP VELRTSNDVM RDQVEKGKKL 480 EISTGCRLFG FNLTNSNSAV SGTVIAPSHI DENPETFQSP KQQKQNASET STKEIKAKHG 540 TTSSMRTRTK VNHGVSVSAF LYSDPSCYSR YVYFPKGSNA RDCRRSCY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-166 | 12 | 353 | 13 | 357 | Auxin response factor 1 |
4ldw_A | 1e-166 | 12 | 353 | 13 | 357 | Auxin response factor 1 |
4ldw_B | 1e-166 | 12 | 353 | 13 | 357 | Auxin response factor 1 |
4ldx_A | 1e-166 | 12 | 353 | 13 | 357 | Auxin response factor 1 |
4ldx_B | 1e-166 | 12 | 353 | 13 | 357 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 366 | 370 | KRPRP |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437774.1 | 0.0 | PREDICTED: auxin response factor 18-like isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A0D2T567 | 0.0 | A0A0D2T567_GOSRA; Auxin response factor | ||||
STRING | Gorai.008G126200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G126200.8 |
Publications ? help Back to Top | |||
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