PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G123200.5
Common NameB456_008G123200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 270aa    MW: 29158.4 Da    PI: 9.6675
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G123200.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_173.72.6e-23150212163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN++L++e+++l+++++kl+ e+
  Gorai.008G123200.5 150 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENTTLRSEINQLTEKSEKLRLEN 212
                         89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165966.1E-2018134No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-18144209No hitNo description
SMARTSM003382.2E-22150214IPR004827Basic-leucine zipper domain
PfamPF001701.4E-21150212IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.748152215IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.94E-11153209No hitNo description
CDDcd147026.59E-19155204No hitNo description
PROSITE patternPS000360157172IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MQAAPETPTK FSGNTNGGLM KKLKGFDGLA MSIGNSTAEN AESGAEPRPS QSAETEGSTD  60
DSDGNTTGAD QTRWKRSREG TPAIGVEGNN EARSKPVAAR EATATISPKP VGSVLPSGMT  120
TSLELSNPPA KSSPTNVPRV MTSEIWLQNE RELKRERRKQ SNRESARRSR LRKQAETEEL  180
ARKVESLTAE NTTLRSEINQ LTEKSEKLRL ENATLVEGLK NGELGYAKDI IMNKKADKEG  240
EMYEKKSNSG AKLHQLFDPS PRADAVAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166172RRSRLRK
2166173RRSRLRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269|PubMed:8672884}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437735.10.0PREDICTED: G-box-binding factor 3-like isoform X2
SwissprotP427765e-71GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A0D2RE890.0A0A0D2RE89_GOSRA; Uncharacterized protein
STRINGGorai.008G123200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.12e-73G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]