PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G123200.3

Common Name

B456_008G123200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 338aa MW: 36521.6 Da PI: 9.3399

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G123200.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	73.2	3.8e-23	251	313	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN++L++e+++l+++++kl+ e+ Gorai.008G123200.3 251 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENTTLRSEINQLTEKSEKLRLEN 313 89*********************************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	4.4E-33	2	90	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	1.0E-19	119	235	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.8E-18	245	310	No hit	No description
Pfam	PF00170	2.1E-21	251	313	IPR004827	Basic-leucine zipper domain
SMART	SM00338	2.2E-22	251	315	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.748	253	316	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.81E-11	254	310	No hit	No description
CDD	cd14702	1.84E-23	256	305	No hit	No description
PROSITE pattern	PS00036	0	258	273	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
DEGKSSKSDK SSSPAPPDQT NIHVYPDWAA MQAYYGPRVP MPPYYNSAVA SGHAPPPYMW 60 GPTQAIMPPY GTPYATIYPH GGVYVHPTVP MGSHGHGVPS SPKAAPETPT KFSGNTNGGL 120 MKKLKGFDGL AMSIGNSTAE NAESGAEPRP SQSAETEGST DDSDGNTTGA DQTRWKRSRE 180 GTPAIGVEGN NEARSKPVAA REATATISPK PVGSVLPSGM TTSLELSNPP AKSSPTNVPR 240 VMTSEIWLQN ERELKRERRK QSNRESARRS RLRKQAETEE LARKVESLTA ENTTLRSEIN 300 QLTEKSEKLR LENATLVVGK FNFLEITPLL KLHSNDW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	273	RRSRLRK
2	267	274	RRSRLRKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269\|PubMed:8672884}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269\|PubMed:8672884}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00318	DAP	Transfer from AT2G46270	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016735515.1	0.0	PREDICTED: G-box-binding factor 3-like isoform X2
Swissprot	P42776	1e-115	GBF3_ARATH; G-box-binding factor 3
TrEMBL	A0A0D2T501	0.0	A0A0D2T501_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.008G123200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.1	1e-114	G-box binding factor 3

Link Out ? help Back to Top
Phytozome	Gorai.008G123200.3

Publications ? help Back to Top
Obayashi T, et al. ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res., 2007. 35(Database issue): p. D863-9 [PMID:17130150] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Ramegowda V, et al. GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 9148 [PMID:28831141]