PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G107700.1
Common NameB456_008G107700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 245aa    MW: 27058.4 Da    PI: 8.6999
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G107700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1868118155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr ++ +g+Wv+eIr p++   + r++lg++ tae+Aa+a++ a+++++g
  Gorai.008G107700.1  68 PVYRGVRMRS-WGKWVSEIRQPKK---KSRIWLGTYPTAEMAARAHDVAALAIKG 118
                         68*****998.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-1368118IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2169127IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-3269127IPR001471AP2/ERF domain
PROSITE profilePS5103222.81369126IPR001471AP2/ERF domain
SMARTSM003805.8E-3769132IPR001471AP2/ERF domain
PRINTSPR003671.9E-107081IPR001471AP2/ERF domain
CDDcd000181.61E-3270128No hitNo description
PRINTSPR003671.9E-1092108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MERDIDIEND AHYNNPLTSC SVISTTTTVA TSITFSVSGP KQNKKTSKNS VAIKGSKKAV  60
GDLERKQPVY RGVRMRSWGK WVSEIRQPKK KSRIWLGTYP TAEMAARAHD VAALAIKGCS  120
AHLNFPELAK TLPRPASTSP KEIQAAASQA AASTYLDTSR WSNNIEPEDK VSRRPRQEQV  180
PVSRSDNMCS TSPFEDDAAL FDLPDLTIDA INRSDGFCSY SSTWQVCAVD AGFRIEEPFA  240
REYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-15701271573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5814772e-65JX581477.1 Gossypium hirsutum clone NBRI_GE14121 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437526.10.0PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ71e-62ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0D2T4270.0A0A0D2T427_GOSRA; Uncharacterized protein
STRINGGorai.008G107700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-59ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]