PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G107300.3

Common Name

B456_008G107300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 336aa MW: 37263.3 Da PI: 8.6657

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G107300.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	69.1	8.4e-22	121	183	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +akeyhrrhkvCe+hskap+v+v gleqrfCqqCs rrrLa+hnerrrk+++ Gorai.008G107300.3 121 RCQVEGCNVTLVNAKEYHRRHKVCETHSKAPKVVVLGLEQRFCQQCS---------------RRRLAGHNERRRKTSH 183 6*********************************************9...............5899999999999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.2E-25	115	169	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	21.88	119	181	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-26	120	185	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.4E-19	122	188	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MEHDDMFMGN RSQTGNKYNP NNGTTNSFNF ETTLSESHAL NHHQQQRHSL YAGDGSSRIQ 60 QSADPHLVCL KLGKRHYFEG STDLNNHRHS AGGYSIGKKG KPYYDNLSGE GGGPSSSTVP 120 RCQVEGCNVT LVNAKEYHRR HKVCETHSKA PKVVVLGLEQ RFCQQCSRRR LAGHNERRRK 180 TSHDSATRNF AQDNKPMTGS FPYVSSPTGR ALSLLSSKVD SWISPSNLST RSSAALRELI 240 VENRAAVLAR QPVLERDWQY IGEPQPAGSN PIFVQHHSLL DPHGWDVQFP ETGGQVTLDL 300 MQASNSAFGM LSVRGKTKEE EECSELWHSL QGTHG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-19	112	180	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622318	0.0	KJ622318.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437524.1	0.0	PREDICTED: squamosa promoter-binding-like protein 7 isoform X2
TrEMBL	A0A0D2SYL7	0.0	A0A0D2SYL7_GOSRA; Uncharacterized protein
STRING	Gorai.008G107300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.4	7e-27	squamosa promoter binding protein-like 10

Link Out ? help Back to Top
Phytozome	Gorai.008G107300.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]