PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.008G107300.2 | ||||||||
Common Name | B456_008G107300, LOC105763734 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 351aa MW: 39057.2 Da PI: 8.5717 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.5 | 6.1e-41 | 121 | 198 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +akeyhrrhkvCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ Gorai.008G107300.2 121 RCQVEGCNVTLVNAKEYHRRHKVCETHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKTSH 198 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.0E-35 | 115 | 183 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.607 | 119 | 196 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.14E-39 | 120 | 200 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.5E-32 | 122 | 195 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 351 aa Download sequence Send to blast |
MEHDDMFMGN RSQTGNKYNP NNGTTNSFNF ETTLSESHAL NHHQQQRHSL YAGDGSSRIQ 60 QSADPHLVCL KLGKRHYFEG STDLNNHRHS AGGYSIGKKG KPYYDNLSGE GGGPSSSTVP 120 RCQVEGCNVT LVNAKEYHRR HKVCETHSKA PKVVVLGLEQ RFCQQCSRFH VVSEFDDSKR 180 SCRRRLAGHN ERRRKTSHDS ATRNFAQDNK PMTGSFPYVS SPTGRALSLL SSKVDSWISP 240 SNLSTRSSAA LRELIVENRA AVLARQPVLE RDWQYIGEPQ PAGSNPIFVQ HHSLLDPHGW 300 DVQFPETGGQ VTLDLMQASN SAFGMLSVRG KTKEEEECSE LWHSLQGTHG * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-32 | 112 | 195 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ622318 | 0.0 | KJ622318.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437524.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 7 isoform X2 | ||||
Swissprot | Q01JD1 | 1e-60 | SPL7_ORYSI; Squamosa promoter-binding-like protein 7 | ||||
Swissprot | Q7XT42 | 1e-60 | SPL7_ORYSJ; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A0D2PSM0 | 0.0 | A0A0D2PSM0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G107300.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G27370.4 | 7e-40 | squamosa promoter binding protein-like 10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.008G107300.2 |
Entrez Gene | 105763734 |
Publications ? help Back to Top | |||
---|---|---|---|
|