PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G107300.2
Common NameB456_008G107300, LOC105763734
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 351aa    MW: 39057.2 Da    PI: 8.5717
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G107300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.56.1e-41121198178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +CqvegC++ l +akeyhrrhkvCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++
  Gorai.008G107300.2 121 RCQVEGCNVTLVNAKEYHRRHKVCETHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKTSH 198
                         6**************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.0E-35115183IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.607119196IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.14E-39120200IPR004333Transcription factor, SBP-box
PfamPF031102.5E-32122195IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEHDDMFMGN RSQTGNKYNP NNGTTNSFNF ETTLSESHAL NHHQQQRHSL YAGDGSSRIQ  60
QSADPHLVCL KLGKRHYFEG STDLNNHRHS AGGYSIGKKG KPYYDNLSGE GGGPSSSTVP  120
RCQVEGCNVT LVNAKEYHRR HKVCETHSKA PKVVVLGLEQ RFCQQCSRFH VVSEFDDSKR  180
SCRRRLAGHN ERRRKTSHDS ATRNFAQDNK PMTGSFPYVS SPTGRALSLL SSKVDSWISP  240
SNLSTRSSAA LRELIVENRA AVLARQPVLE RDWQYIGEPQ PAGSNPIFVQ HHSLLDPHGW  300
DVQFPETGGQ VTLDLMQASN SAFGMLSVRG KTKEEEECSE LWHSLQGTHG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-32112195184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223180.0KJ622318.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437524.10.0PREDICTED: squamosa promoter-binding-like protein 7 isoform X2
SwissprotQ01JD11e-60SPL7_ORYSI; Squamosa promoter-binding-like protein 7
SwissprotQ7XT421e-60SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBLA0A0D2PSM00.0A0A0D2PSM0_GOSRA; Uncharacterized protein
STRINGGorai.008G107300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.47e-40squamosa promoter binding protein-like 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]