PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G107300.1
Common NameB456_008G107300, LOC105763734
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 356aa    MW: 39591.9 Da    PI: 8.4265
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G107300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.46.2e-41121198178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +CqvegC++ l +akeyhrrhkvCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++
  Gorai.008G107300.1 121 RCQVEGCNVTLVNAKEYHRRHKVCETHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKTSH 198
                         6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.1E-35115183IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.607119196IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.11E-38120200IPR004333Transcription factor, SBP-box
PfamPF031102.6E-32122195IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEHDDMFMGN RSQTGNKYNP NNGTTNSFNF ETTLSESHAL NHHQQQRHSL YAGDGSSRIQ  60
QSADPHLVCL KLGKRHYFEG STDLNNHRHS AGGYSIGKKG KPYYDNLSGE GGGPSSSTVP  120
RCQVEGCNVT LVNAKEYHRR HKVCETHSKA PKVVVLGLEQ RFCQQCSRFH VVSEFDDSKR  180
SCRRRLAGHN ERRRKTSHDS ATRNFAQVCC QTDNKPMTGS FPYVSSPTGR ALSLLSSKVD  240
SWISPSNLST RSSAALRELI VENRAAVLAR QPVLERDWQY IGEPQPAGSN PIFVQHHSLL  300
DPHGWDVQFP ETGGQVTLDL MQASNSAFGM LSVRGKTKEE EECSELWHSL QGTHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-31112195184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223180.0KJ622318.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437523.10.0PREDICTED: squamosa promoter-binding-like protein 7 isoform X1
TrEMBLA0A0D2U0Y40.0A0A0D2U0Y4_GOSRA; Uncharacterized protein
STRINGGorai.008G107300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15613914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.41e-39squamosa promoter binding protein-like 10
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]