PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G102300.2 | ||||||||
Common Name | B456_008G102300, LOC105763676 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 401aa MW: 45222.6 Da PI: 6.3622 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.5 | 4.3e-11 | 77 | 118 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 +k +rr+++NReAAr+sR+RKka++++Le +L + k+L Gorai.008G102300.2 77 DKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLIQLEKEL 118 689**************************8666666555444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 9.9E-8 | 73 | 122 | No hit | No description |
SMART | SM00338 | 1.6E-6 | 74 | 134 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.749 | 76 | 120 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.6E-8 | 78 | 113 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.74E-7 | 78 | 118 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 81 | 96 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07727 | 6.3E-6 | 148 | 192 | IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase |
Pfam | PF14144 | 8.6E-30 | 202 | 277 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MDFPSTQFVP SRMMGTYEPI HQIGMWGENF KSIGNPSISA SVIVEVDNKL ENESETASHE 60 MPAPSCKHDQ EASKPFDKIQ RRLAQNREAA RKSRLRKKAY VQQLESSRLK LIQLEKELEQ 120 AREQGLYIGG GLEAGHLGFS GVVNPGDDHI EQKLKKGLAE QFEIKDLGAL KYFLGMEFSR 180 SKEGIAAFEM EYKHWMQVQN RQLGELRTAL NAQISDIELR IVVENGMSHY FELFRMKSTV 240 AKADVFYVMS GTWKTSAERF FSWIGGFRPS ELLKVLVAQL DPLTDQQIFE VCNLKQSCQQ 300 AEDALSQGME KLQETVSATL AAGQLGQGTY FPQVAMAMEK LEALVCFVNQ ADHLRQETLQ 360 QMSHILTTRQ AARGLLALGE YIQRLQDLST LWATHPREPA * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437433.1 | 0.0 | PREDICTED: transcription factor TGA4-like isoform X2 | ||||
Swissprot | Q39237 | 1e-172 | TGA1_ARATH; Transcription factor TGA1 | ||||
TrEMBL | A0A0D2TTK0 | 0.0 | A0A0D2TTK0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G102300.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.5 | 1e-165 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G102300.2 |
Entrez Gene | 105763676 |