PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G102300.1

Common Name

B456_008G102300, LOC105763676

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 401aa MW: 45222.6 Da PI: 6.3622

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G102300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.5	4.3e-11	77	118	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 +k +rr+++NReAAr+sR+RKka++++Le +L + k+L Gorai.008G102300.1 77 DKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLIQLEKEL 118 689**************************8666666555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.9E-8	73	122	No hit	No description
SMART	SM00338	1.6E-6	74	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.749	76	120	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.6E-8	78	113	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-7	78	118	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF07727	6.3E-6	148	192	IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase
Pfam	PF14144	8.6E-30	202	277	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MDFPSTQFVP SRMMGTYEPI HQIGMWGENF KSIGNPSISA SVIVEVDNKL ENESETASHE 60 MPAPSCKHDQ EASKPFDKIQ RRLAQNREAA RKSRLRKKAY VQQLESSRLK LIQLEKELEQ 120 AREQGLYIGG GLEAGHLGFS GVVNPGDDHI EQKLKKGLAE QFEIKDLGAL KYFLGMEFSR 180 SKEGIAAFEM EYKHWMQVQN RQLGELRTAL NAQISDIELR IVVENGMSHY FELFRMKSTV 240 AKADVFYVMS GTWKTSAERF FSWIGGFRPS ELLKVLVAQL DPLTDQQIFE VCNLKQSCQQ 300 AEDALSQGME KLQETVSATL AAGQLGQGTY FPQVAMAMEK LEALVCFVNQ ADHLRQETLQ 360 QMSHILTTRQ AARGLLALGE YIQRLQDLST LWATHPREPA *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MDFPSTQFVP SRMMGTYEPI HQIGMWGENF KSIGNPSISA SVIVEVDNKL ENESETASHE  60
MPAPSCKHDQ EASKPFDKIQ RRLAQNREAA RKSRLRKKAY VQQLESSRLK LIQLEKELEQ  120
AREQGLYIGG GLEAGHLGFS GVVNPGDDHI EQKLKKGLAE QFEIKDLGAL KYFLGMEFSR  180
SKEGIAAFEM EYKHWMQVQN RQLGELRTAL NAQISDIELR IVVENGMSHY FELFRMKSTV  240
AKADVFYVMS GTWKTSAERF FSWIGGFRPS ELLKVLVAQL DPLTDQQIFE VCNLKQSCQQ  300
AEDALSQGME KLQETVSATL AAGQLGQGTY FPQVAMAMEK LEALVCFVNQ ADHLRQETLQ  360
QMSHILTTRQ AARGLLALGE YIQRLQDLST LWATHPREPA *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269\|PubMed:8628224}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437433.1	0.0	PREDICTED: transcription factor TGA4-like isoform X2
Swissprot	Q39237	1e-172	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A0D2TTK0	0.0	A0A0D2TTK0_GOSRA; Uncharacterized protein
STRING	Gorai.008G102300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2976	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-165	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G102300.1
Entrez Gene	105763676

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]