PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G099700.1
Common NameB456_008G099700, LOC105763645
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 466aa    MW: 53659.1 Da    PI: 6.3621
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G099700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.25.1e-2940124187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+laL+++r+em+ ++r++  k+plWeevs+k++e g++r++k+Ckek+en+ k+++++keg++++++++s  +++f+qlea
  Gorai.008G099700.1  40 RWPRQETLALLKIRSEMDVAFRDSGVKAPLWEEVSRKLAELGYNRGAKKCKEKFENVYKYHRRTKEGRSGKSNGKS--YRFFEQLEA 124
                         8********************************************************************9877776..*******85 PP
2trihelix106.22.3e-33304389187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k+ev aLi++r++++ +++++  k+plWee+s +m++ g+ rs+k+Ckekwen+nk++k++ke++kkr +e+s+tcpyf+ql+a
  Gorai.008G099700.1 304 RWPKDEVEALIRLRTNLDMQYQDAGPKGPLWEEISTAMKKLGYDRSAKRCKEKWENMNKYFKRVKESNKKR-PEDSKTCPYFHQLDA 389
                         8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.053397IPR017877Myb-like domain
SMARTSM007170.00573799IPR001005SANT/Myb domain
PfamPF138377.8E-1939125No hitNo description
CDDcd122031.00E-2239104No hitNo description
PROSITE profilePS500907.793297361IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.2E-5300361IPR009057Homeodomain-like
SMARTSM007174.9E-4301363IPR001005SANT/Myb domain
SuperFamilySSF466896.8E-5302373IPR009057Homeodomain-like
PfamPF138375.1E-24303390No hitNo description
CDDcd122031.10E-24303368No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MMENSSFPES NTVGDNVSLE NEEEAKVKNE ESEGNFSGNR WPRQETLALL KIRSEMDVAF  60
RDSGVKAPLW EEVSRKLAEL GYNRGAKKCK EKFENVYKYH RRTKEGRSGK SNGKSYRFFE  120
QLEALDHHPS LVPPASGDIN TSVEPLNVIH DAIPFSVRNP ASNFNETSTS TTSSSSKESD  180
GTRKKKRKLT DFFERLMREM MEKQENLQKK FIEAIEKSEL DRMAREEAWK VQELARLKRE  240
RELLVQERSI AAAKDAAVLA FLQKFSDQTT SVQLPDISFP VEKVVDRQEN SNGSESYMHL  300
STSRWPKDEV EALIRLRTNL DMQYQDAGPK GPLWEEISTA MKKLGYDRSA KRCKEKWENM  360
NKYFKRVKES NKKRPEDSKT CPYFHQLDAL YKEKTKRIDG SGYELKPEEL LMHMMGAQEE  420
RLHQESATED VESENVNQNR EENRNAEGDA YQIVANDPSP MPIIG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188KKKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437382.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-125TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0D2SY590.0A0A0D2SY59_GOSRA; Uncharacterized protein
STRINGGorai.008G099700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-119Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]