PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G094000.1

Common Name

B456_008G094000, LOC105763568

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 337aa MW: 36383.4 Da PI: 8.6536

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G094000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	9.9e-40	34	92	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++alkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk Gorai.008G094000.1 34 QAALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKL 92 6789****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-26	19	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-33	35	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.432	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010052	Biological Process	guard cell differentiation
GO:0010118	Biological Process	stomatal movement
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1902066	Biological Process	regulation of cell wall pectin metabolic process
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MSPDNPSVKP AAKDENQSSG NRKTGSTRAA QDQQAALKCP RCDSPNTKFC YYNNYSLTQP 60 RHFCKTCRRY WTKGGALRNV PIGGGCRKNK KLKPSSRLSS DSKDSISSSE MGGGLKFFHG 120 LSPAMDFQLG GLSLPRLNSS PPAIYNQFAS FGDTDTPPPT SFTLDPSGSS TSLMGFNNYP 180 LSSLTPGLSG AILEMGSLNV SSGLASSIES LSSINQDLHW KLQQQRLAML FGGGGENQKE 240 NTITTTACSV PVENQPQRLQ PILFHNLEIS KPEISSVENP RKATTNENAT EWFFGNSYAP 300 VTPTPTTSSN GNDNTTTSNW NGVQAWNDLH HYSTLP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	3e-46	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437263.1	0.0	PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBL	A0A0D2RCH5	0.0	A0A0D2RCH5_GOSRA; Uncharacterized protein
STRING	Gorai.008G094000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4950	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	9e-63	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G094000.1
Entrez Gene	105763568

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]