PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G073400.1 | ||||||||
Common Name | B456_008G073400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 300aa MW: 33295.7 Da PI: 6.7868 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.4 | 2.2e-42 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC+++Cv+apyfp ++p+kf+nvhk++Gasnv kll++l++++re+a++sl+yeAear++dPvyG+vg+i+ lq++l+q++ Gorai.008G073400.1 7 PCAACKFLRRKCTQECVFAPYFPPDHPQKFQNVHKVYGASNVAKLLNELNPSQREEAVTSLAYEAEARLQDPVYGCVGLISILQHRLKQMQ 97 7****************************************************************************************** PP DUF260 92 aelallkee 100 ++l +k+e Gorai.008G073400.1 98 HDLGNAKKE 106 **9988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.625 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.7E-42 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DHPQKFQNVH KVYGASNVAK LLNELNPSQR 60 EEAVTSLAYE AEARLQDPVY GCVGLISILQ HRLKQMQHDL GNAKKELSTY IGPQALLPIL 120 QPPLFFPQQH LGNPSSMMQH NMMPMMGIPT AASLSHGGQL VIREPQQQQQ QFFEPQQQMA 180 AVVAAREQQD FLGGYELQQL HHQQQPDMLR FNNSGFEGAG SVTATGFNQI TPVAAMSPSL 240 ALGCFDNLYQ IQPQEQDHPH HHSHGTLPFQ SQLLLQPLQA QPQVHLRSES EEGRSTGPC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-48 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-48 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269|PubMed:15821980}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016734748.1 | 0.0 | PREDICTED: LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 2e-83 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A0D2SWM3 | 0.0 | A0A0D2SWM3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G073400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8008 | 24 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-64 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G073400.1 |
Publications ? help Back to Top | |||
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