PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G072900.1

Common Name

B456_008G072900, LOC105763337

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 347aa MW: 36493.2 Da PI: 9.3933

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G072900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.3e-39	65	124	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+++ Gorai.008G072900.1 65 TQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNTT 124 6889*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-26	62	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-32	66	122	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	68	122	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	70	106	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MIQELLGGSS GFHFGGTAGR RISINGTILD GTLASSPSPS PSPSTTSSST TTTNSTASAA 60 KSDQTQNLRC PRCDSSNTKF CYYNNYNLTQ PRHFCKTCRR YWTKGGALRN VPIGGGCRKN 120 KNTTTTTTTT TASVSTSMGK SSAAKMKTVV SDIGRTGLGN GFDHDLQSSP ILWASPQSSH 180 LLALLRTTPN PNANTLSTNS PVSIKEEVSL LGSHAMNEPA VANAALNART LGLDPLSQVP 240 SLGLCSPFWK NNQHQAQQQH QSNNNNGSFL LGEVQNTGFQ GLYQRLKSSS NYYSDSSAVV 300 LSNVGSSSSS STVLESAPVA GGELGYWNPA FSSSWSDLPT TNGAYP*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MIQELLGGSS GFHFGGTAGR RISINGTILD GTLASSPSPS PSPSTTSSST TTTNSTASAA  60
KSDQTQNLRC PRCDSSNTKF CYYNNYNLTQ PRHFCKTCRR YWTKGGALRN VPIGGGCRKN  120
KNTTTTTTTT TASVSTSMGK SSAAKMKTVV SDIGRTGLGN GFDHDLQSSP ILWASPQSSH  180
LLALLRTTPN PNANTLSTNS PVSIKEEVSL LGSHAMNEPA VANAALNART LGLDPLSQVP  240
SLGLCSPFWK NNQHQAQQQH QSNNNNGSFL LGEVQNTGFQ GLYQRLKSSS NYYSDSSAVV  300
LSNVGSSSSS STVLESAPVA GGELGYWNPA FSSSWSDLPT TNGAYP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX584385	4e-55	JX584385.1 Gossypium hirsutum clone NBRI_GE17677 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436989.1	0.0	PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBL	A0A0D2SWL4	0.0	A0A0D2SWL4_GOSRA; Uncharacterized protein
STRING	Gorai.008G072900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16000	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	1e-32	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G072900.1
Entrez Gene	105763337

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]