PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G071600.3

Common Name

B456_008G071600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 347aa MW: 38707.3 Da PI: 10.1524

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G071600.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	62.1	8.9e-20	66	146	3	86
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 v+ ps+v gr+ +p +fa+++ ++++ ltl +++g++W kl y +kk++++ l +GW+eFv++n+L++gD++vF+l++ Gorai.008G071600.3 66 IVMQPSYVR--GRMFIPSDFARKFLTVHKS--NLTLCNSTGKTWHAKLYYpaNKKPNAH-LYGGWREFVEDNHLNVGDICVFELIK 146 556555554..679********666444..6***********88988888887.677******************986 PP
2	B3	60.6	2.6e-19	242	338	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrse 89 v ps+v++ + + +p +f +++ +k s +++l+ +grsW+v++ r++s++ ++ +k W +F+ +n+L++gD++vF+l+++++ Gorai.008G071600.3 242 SVVIHPSHVGSCSTVHIPEEFGKRYLKK---SGEMMLRVADGRSWNVEYERRGRSKGrkaVFGGKSWGQFAMDNELEVGDVCVFELMNENG 329 566779*****************533...448***********773333334558888********************98766 PP E..EEEEE- CS B3 90 felvvkvfr 98 l v ++r Gorai.008G071600.3 330 NLLEVVIHR 338 656666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.92E-24	58	150	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.9E-24	58	148	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.14E-21	62	146	No hit	No description
PROSITE profile	PS50863	13.676	62	158	IPR003340	B3 DNA binding domain
SMART	SM01019	6.6E-11	64	158	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.8E-17	64	146	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.4E-21	234	338	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.32E-20	236	336	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.37E-23	239	338	No hit	No description
PROSITE profile	PS50863	14.353	241	339	IPR003340	B3 DNA binding domain
SMART	SM01019	9.4E-21	241	340	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-17	242	338	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MRIDASNQHE QNSKLEVLSS GTSPDAQRSV KTKAFSCVQR LAAIEKAHAV QIASAFESTE 60 NPVFMIVMQP SYVRGRMFIP SDFARKFLTV HKSNLTLCNS TGKTWHAKLY YPANKKPNAH 120 LYGGWREFVE DNHLNVGDIC VFELIKYPEI LMKTRSSVQH CKMTRTSLSG SIQAKGIKHE 180 KGKSLNFQYS TEELGGGLKN SAKGDSGRKS GARRCLKPDP VYQKRRACTG GGAFRTSNPS 240 FSVVIHPSHV GSCSTVHIPE EFGKRYLKKS GEMMLRVADG RSWNVEYERR GRSKGRKAVF 300 GGKSWGQFAM DNELEVGDVC VFELMNENGN LLEVVIHRKL LLVEIN*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MRIDASNQHE QNSKLEVLSS GTSPDAQRSV KTKAFSCVQR LAAIEKAHAV QIASAFESTE  60
NPVFMIVMQP SYVRGRMFIP SDFARKFLTV HKSNLTLCNS TGKTWHAKLY YPANKKPNAH  120
LYGGWREFVE DNHLNVGDIC VFELIKYPEI LMKTRSSVQH CKMTRTSLSG SIQAKGIKHE  180
KGKSLNFQYS TEELGGGLKN SAKGDSGRKS GARRCLKPDP VYQKRRACTG GGAFRTSNPS  240
FSVVIHPSHV GSCSTVHIPE EFGKRYLKKS GEMMLRVADG RSWNVEYERR GRSKGRKAVF  300
GGKSWGQFAM DNELEVGDVC VFELMNENGN LLEVVIHRKL LLVEIN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	3e-14	41	154	27	137	B3 domain-containing transcription factor VRN1
4i1k_B	3e-14	41	154	27	137	B3 domain-containing transcription factor VRN1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435369.1	1e-133	PREDICTED: B3 domain-containing protein REM19-like
Refseq	XP_016720614.1	1e-128	PREDICTED: B3 domain-containing protein Os11g0197600-like
Refseq	XP_017637007.1	1e-127	PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X2
TrEMBL	A0A0D2T1X7	0.0	A0A0D2T1X7_GOSRA; Uncharacterized protein
STRING	Gorai.008G071600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	2e-15	related to vernalization1 1

Link Out ? help Back to Top
Phytozome	Gorai.008G071600.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]